Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04722 ATGGAGCATCACTTAGTGTTGCTTCTTTGTTTTTCTACATTGTTATATGTTTCTTCAGCTTTGAACTTAGAGGGTTTGGCTCTATTGTCACTCTTGAGTCACATGAATGTTGTTCCTCCTATCCTAAACTCCACATGGAAATCTTCTGATTCCACTCCATGTTCTCCATGGGAAGGAGTAGAATGTGATCATGCTTTAAATGTAGTAACTCTAAATCTAAGTGATTATTCAATTTCTGGTCAATTAGGACCTGGAATTGGAAAATTGATTCACCTTAAAACCCTAGATTTGTCACTTAATGATTTTTCAGGAGAAATTCCTTCAGAATTAAGCAATTGTAGTATGCTTCAGTACATGGATCTTTCTAGAAACAACTTCAGTGGTAAAATTCCTCAATCCTTGTTTCAAATTAATCATTTGACATATTTGTATCTCTTTAGTAATAGCTTAAGTGGTTCAATTCCTGCTAATATTGGAAATTGTAGTCAATTGATTATGGTAAATTTGGACTCGAATGGATTGGAGGGAGTTCTTCCCGAGAGTCTAAACGATCTAAAAGAACTTCAAGAGCTAAGTCTCAATAGTAATAATCTCGAAGGGAATTGTAGTGGTCTAATAGAATTCTATGCTTCAATTAATAACTTAGAGGGTAGCATACCATCAAGCTTAGGCTTGCTTCACAACCTTACTACTCTAGTGATTCCAGACAATCGTTTGTCTGGGAATATACCTCGACAGATTGGTAATTGTAAGTCATTGGAAGTTTTACAATTGTATACCAATGAACTTGAGGGGGAAATTCCTAGTGAGTTGGGAAAGTTGAGTAAATTACAAGAGCTTCAATTGTTCAATAACCATTTGGTAGGTGAAATTCCACTTAGCATATGGAAAATTCAAAGCCTTGAGCATGTCTTTGTGTATAATAATAGTCTATCGGGGGAGTTACCTTTAGAGATGACCGAGCTCAAAAATCTCAAGAACATTTCATTGTTTAACAACCGATTCTCGGGAGTTATACCTCAAACCTTAGGAATTAATAGCAGTTTGGTGCAGTTGGATTTAATGTTTAACATGTTTAATGGTACACTTCCACCAAATCTTTGTTTTGGAAAGAATTTAGCAGTTCTGAATATGGGTGGTAATCAATTTATTGGAAGTATACCTTCGGATGTAGGAAGGTGTACGACTCTCACAAGGGTGAGACTCGAAGATAATAATTTTTCCGGGCGTCTTCCTGATTTTGAAGAGAATCCAAATTTCTCGTACTTGAGCATTGGCAACAACAATATCAACGGAACAATTCCGTCAAGTTTGAGTAACTGCACAAATCTCTCTCTTTTAGATTTGTCCATGAACAGCTTAACAGGTTTTGTACCTTTAGAGCTTGGAAACCTTGTGAATCTCCATAGTTTGGATCTTTCTGACAATAATTTGGAAGGTCCTTTGCCGCATCAACTTTCAAACTGTACCAAAATGATTAGTTTTGATGTGGGATTCAATTTCCTTAATGGTTCGTTTCCATCGAGTTTTCGGAGCTGGACAGACTTAGCCACTTTAATTCTTAGTGAGAATCATTTTAGTGACGGAATCCCAACTTTCCTGTCAGAATTTGAAAATCTCAATGACTTAAAACTTGGTGGAAATAACTTTGGAGGAAATATTCCGAAATCATTCGGAAAATTTCAGAGTTTGTCATATGATTTAAATCTAAGTGCTAATGGACTAGTAGGTGAGATTCCTAGGGAGATTGTAAACCTGAAGAGTCTGCAAATACTGGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTCGACGAGCTAAGTTCGTTATCCGAATTGAACATCTCATACAATTCTTTTGAAGGTTCTGTATCACAAAAACTGACGAAGTTATCGAATTCTTCTTCATCATTTTTGGGCAATCCCGGCCTGTGTGTTAGCATTTCGTTATCCGATGGCTTGAATTTCTCAAGAAGTAGCCATTTAAAGCTATGTAACCAAGATGCCATAAAATCAAAAGGTCACAGTAAAGTTGCAATTGTGATGATAGCACTTGGATCCGCGATACTTGTGTTGCTCTTGCTAGGACTAATTTATATATTTTTAGTCAGAAAGTCTAAACAGGAAGCCATCGTCACCGAAGAAAACGATTCTTCGGACCTTCTCAAGAAAGTGATGAAAGCTACAGAGAATCTAAATGATGAGTATATTATAGGCAGAGGTGCTGAAGGAGTTGTTTACAAAGCTGCAATAGGTCCAGACAATATTTTGGCAGTGAAGAAGCTTGTATTTGACGAGGACGAACGAAAACGCTTAAGCATGTTAAGAGAAATCAAAACACTTTCACAGATTAGGCATAGAAATTTGGTGAAACTTGAAGGTGTTTGGTTGAAAGAAAATTATGGTCTAATCTCATACAAATACATGCCAAATGGAAGCCTTTATGAAGTTTTGCACGAGAAGAATCCGCCGCAGTCGTTAAAATGGAATGTCAGGAATAAGATAGCTATTGGTATTGCTCATGGATTGGCTTATCTTCATTATGACTGTGATCCTGTAATAGTTCATAGAGACATCAAAACAAGCAACATACTTTTAGATTCTGATATGGAGCCTCATGTTGCCGATTTCGGCCTTGCTAAGCTTTTGGATCAGTCTTCTAGTTCTACCTCAACACAGTCAATAAATGTTTCTGGTACACTTGGTTACATTGCACCAGAGAATGCATATACAACAGTAATGGGAAAGGAATCTGATGTATACAGTTATGGTGTGGTTTTGCTTGAGTTGATATCAAGAAAGAAGGCAATAGATCCATCATTTATGGAAGAAATGGATATTGTTTCTTGGGTGAGATCATTGTGGGAGGAAACAGGAGTTGTTGATGAAATTGTTGATTCAGAACTTGCCAATGAAATTTCTAGATATAATTCAAATGTGTTGAAGGAAGTAACTAAGGTGCTTTTGGTGGCTTTCAAATGTACAGAAAGGGATCCACGTAGGAGACCTACAATGAGAGAGGTTATCAAGAATTTGTAG 3045 0.3678 MEHHLVLLLCFSTLLYVSSALNLEGLALLSLLSHMNVVPPILNSTWKSSDSTPCSPWEGVECDHALNVVTLNLSDYSISGQLGPGIGKLIHLKTLDLSLNDFSGEIPSELSNCSMLQYMDLSRNNFSGKIPQSLFQINHLTYLYLFSNSLSGSIPANIGNCSQLIMVNLDSNGLEGVLPESLNDLKELQELSLNSNNLEGNCSGLIEFYASINNLEGSIPSSLGLLHNLTTLVIPDNRLSGNIPRQIGNCKSLEVLQLYTNELEGEIPSELGKLSKLQELQLFNNHLVGEIPLSIWKIQSLEHVFVYNNSLSGELPLEMTELKNLKNISLFNNRFSGVIPQTLGINSSLVQLDLMFNMFNGTLPPNLCFGKNLAVLNMGGNQFIGSIPSDVGRCTTLTRVRLEDNNFSGRLPDFEENPNFSYLSIGNNNINGTIPSSLSNCTNLSLLDLSMNSLTGFVPLELGNLVNLHSLDLSDNNLEGPLPHQLSNCTKMISFDVGFNFLNGSFPSSFRSWTDLATLILSENHFSDGIPTFLSEFENLNDLKLGGNNFGGNIPKSFGKFQSLSYDLNLSANGLVGEIPREIVNLKSLQILDLSWNNLTGSIQVLDELSSLSELNISYNSFEGSVSQKLTKLSNSSSSFLGNPGLCVSISLSDGLNFSRSSHLKLCNQDAIKSKGHSKVAIVMIALGSAILVLLLLGLIYIFLVRKSKQEAIVTEENDSSDLLKKVMKATENLNDEYIIGRGAEGVVYKAAIGPDNILAVKKLVFDEDERKRLSMLREIKTLSQIRHRNLVKLEGVWLKENYGLISYKYMPNGSLYEVLHEKNPPQSLKWNVRNKIAIGIAHGLAYLHYDCDPVIVHRDIKTSNILLDSDMEPHVADFGLAKLLDQSSSSTSTQSINVSGTLGYIAPENAYTTVMGKESDVYSYGVVLLELISRKKAIDPSFMEEMDIVSWVRSLWEETGVVDEIVDSELANEISRYNSNVLKEVTKVLLVAFKCTERDPRRRPTMREVIKNL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04722 1014 SUPERFAMILY RNI-like 339 635 - -
Trre1g04722 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 856 868 IPR008271 GO:0004672|GO:0006468
Trre1g04722 1014 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 289 1013 - -
Trre1g04722 1014 Gene3D Phosphorylase Kinase; domain 1 702 810 - -
Trre1g04722 1014 FunFam Leucine-rich repeat receptor-like protein kinase 22 180 - -
Trre1g04722 1014 SMART LRR_sd22_2 586 611 - -
Trre1g04722 1014 SMART LRR_sd22_2 465 491 - -
Trre1g04722 1014 SMART LRR_sd22_2 441 462 - -
Trre1g04722 1014 SMART LRR_sd22_2 226 252 - -
Trre1g04722 1014 SMART LRR_sd22_2 185 217 - -
Trre1g04722 1014 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 371 656 - -
Trre1g04722 1014 Gene3D Ribonuclease Inhibitor 415 654 IPR032675 -
Trre1g04722 1014 PRINTS Leucine-rich repeat signature 586 599 - -
Trre1g04722 1014 PRINTS Leucine-rich repeat signature 444 457 - -
Trre1g04722 1014 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 702 810 - -
Trre1g04722 1014 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
Trre1g04722 1014 Pfam Leucine rich repeat 228 287 IPR001611 GO:0005515
Trre1g04722 1014 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Trre1g04722 1014 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 200 267 - -
Trre1g04722 1014 SUPERFAMILY Protein kinase-like (PK-like) 723 1013 IPR011009 -
Trre1g04722 1014 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Trre1g04722 1014 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 268 363 - -
Trre1g04722 1014 Gene3D Transferase(Phosphotransferase) domain 1 811 1014 - -
Trre1g04722 1014 Pfam Protein kinase domain 737 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04722 1014 Gene3D Ribonuclease Inhibitor 20 204 IPR032675 -
Trre1g04722 1014 SMART LRR_typ_2 465 489 IPR003591 -
Trre1g04722 1014 SMART LRR_typ_2 89 113 IPR003591 -
Trre1g04722 1014 SMART LRR_typ_2 586 613 IPR003591 -
Trre1g04722 1014 SMART LRR_typ_2 274 298 IPR003591 -
Trre1g04722 1014 SMART LRR_typ_2 185 208 IPR003591 -
Trre1g04722 1014 SMART LRR_typ_2 137 161 IPR003591 -
Trre1g04722 1014 SMART LRR_typ_2 226 250 IPR003591 -
Trre1g04722 1014 FunFam Serine/threonine-protein kinase-like protein CCR4 811 1014 - -
Trre1g04722 1014 SMART serkin_6 734 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04722 1014 SUPERFAMILY RNI-like 71 409 - -
Trre1g04722 1014 ProSiteProfiles Leucine-rich repeat profile. 588 610 IPR001611 GO:0005515
Trre1g04722 1014 Gene3D Ribonuclease Inhibitor 205 414 IPR032675 -
Trre1g04722 1014 ProSiteProfiles Protein kinase domain profile. 734 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04722 Trre-Chr1 53197509 53200742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04722 6 1014 Receptor kinase-like Gene Family AT1G17750 48.247 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g04722 Pkinase 6.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04722 - - gmx:100817655 1241.1