Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04719 ATGAACAACACTTCCGGTTACCATAACCCTTCAGAGAACTTAAATATATTAACATATTATTATACTGGGTTATCTTTTGCCCTTATCTTCCTCATGATGTTCATAGCTCTATTTTCATGTTACTGTAACAACAGAAACCGCCAAAACAGGCTGCAATTTCGAGGAAGAACTTCTAACAGAACAATGGTCATCACAGAGACAAATACTGAAGTTAATATGGAAGAACAAGATTCCATTCTTAATAGTTACCCTGTTTTGTTGTACTCTCAAGTCAAGCTTCATCATAAAGATGATTCAACATCACTCATTTGCTCAATTTGTTTGGCAGATTATAAAGATTCTGAGTTGTTGCGACTCTTATCTGATTGTGGTCACTTTTTTCATAAGGAATGTGTTGCTACATGGTTTAGGCTTAACATGTCATGTCCCATGTGTCGAAACTCGCCACTTCCAACACCCATTGTTCAAGTTACACCATTGGCAAACCAAACCACACATGATTGA 504 0.3671 MNNTSGYHNPSENLNILTYYYTGLSFALIFLMMFIALFSCYCNNRNRQNRLQFRGRTSNRTMVITETNTEVNMEEQDSILNSYPVLLYSQVKLHHKDDSTSLICSICLADYKDSELLRLLSDCGHFFHKECVATWFRLNMSCPMCRNSPLPTPIVQVTPLANQTTHD 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04719 167 SMART ringv_2 103 146 IPR011016 GO:0008270
Trre1g04719 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 156 IPR045899 -
Trre1g04719 167 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Trre1g04719 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 150 IPR013083 -
Trre1g04719 167 Pfam Ring finger domain 104 146 IPR001841 -
Trre1g04719 167 SUPERFAMILY RING/U-box 80 150 - -
Trre1g04719 167 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04719 Trre-Chr1 53160081 53160584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04719 20 167 C3H Transcription Factor Family AT5G06490 33.140 7.77e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04719 - - adu:107466513 156.762