Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04718 ATGACTAGGAAGAAGGTGAAACTTGCATTTATCGTTGATGATTCAGCAAGGAAGGCAACCTATAAGAAAAGAAAGAATGGAATCATCAAGAAGGTGAGCGAACTCACCATTCTTTGCGGTATTCCAGCATGTGCTATAATTTCAAATCCTTTTGATTCTAAAGCAGAGGTGTGGCCAGATTTAGCGGGAGCCAAGCATATTATTGAGAGGTATCAAAATTCATCTGTGATAGATGGGGCAAAAAATGTGAACCAAGAGAGCTTCCTCTTACAGAGGATTACTAAAGCCAGAGAACAACTTAAAAAGCTAAAGCACGAAAATCGTGAAAAGGAGCTGACTGTTCGTATGATTGGGTACATGAAAAACAAACAGCTGCCTGATGATCTATCCGTTTCAGATTTGAAAGAATTTGATAAGCTAATTGAGAAAAATATGAAAAAGATTGATAACAAGATTGTTGAGGTCAAATGA 471 0.3737 MTRKKVKLAFIVDDSARKATYKKRKNGIIKKVSELTILCGIPACAIISNPFDSKAEVWPDLAGAKHIIERYQNSSVIDGAKNVNQESFLLQRITKAREQLKKLKHENREKELTVRMIGYMKNKQLPDDLSVSDLKEFDKLIEKNMKKIDNKIVEVK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04718 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre1g04718 156 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Trre1g04718 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Trre1g04718 156 Coils Coil 86 113 - -
Trre1g04718 156 PANTHER MADS BOX PROTEIN 3 152 - -
Trre1g04718 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre1g04718 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre1g04718 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre1g04718 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre1g04718 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04718 Trre-Chr1 53156548 53157018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04718 1 152 MADS-box Gene Family AT5G26630 43.137 1.21e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre1g04718 SRF-TF 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04718 - - gmx:100792290 204.912