Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04714 ATGAACAACACTTCCATTAATTCTGAAAACCCTTCAGAAAAACCAACTACATTACCATATTATTACATTGGATTTTCTTTTGTATTTATCCTCATTTTGATCTTCATACCTATTTATTTTAGTTACTGTAACCAGAGGAATTCACGAAACAGACACCAATCTGCTGCTGGCACTGGCAGCAACAACAGAGATGATATTGAAGTGAATATTGAAGAACAAGATGATGATATCCTTAATAGTTACCCCATTTTGTTATACTCCGAATTCAAGCTTCACAAGCCAGCAGATTCAACATCACTTATTTGCTCAATTTGTTTAGGAGATTATAAAGATTCAGAGTTGTTGCGACTCTTATCTGATTGTGGTCACTTTTTTCATAAGGAATGTGTTGCTACATGGTTTAGGCTTAACATGTCATGTCCAATGTGTCGGAACTCGCCACTTCAAACATCCCTTGCTCAAGTTACACCATTGGTAAACTAA 483 0.3561 MNNTSINSENPSEKPTTLPYYYIGFSFVFILILIFIPIYFSYCNQRNSRNRHQSAAGTGSNNRDDIEVNIEEQDDDILNSYPILLYSEFKLHKPADSTSLICSICLGDYKDSELLRLLSDCGHFFHKECVATWFRLNMSCPMCRNSPLQTSLAQVTPLVN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04714 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 148 IPR013083 -
Trre1g04714 160 Pfam Ring finger domain 102 144 IPR001841 -
Trre1g04714 160 SMART ring_2 102 143 IPR001841 -
Trre1g04714 160 SMART ringv_2 101 144 IPR011016 GO:0008270
Trre1g04714 160 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Trre1g04714 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 153 IPR045899 -
Trre1g04714 160 SUPERFAMILY RING/U-box 78 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04714 Trre-Chr1 53112816 53113298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04714 74 160 C3H Transcription Factor Family AT2G35910 51.648 6.35e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04714 - - adu:107466513 144.436