Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04713 ATGATGAACAACAACAGCACCTCACCACCCCAAAACAACAACGATTTTGACGCGAATGGGTTCACGTACATCTTAACATTTGTATTTGCTCTCGTATTCTTGATTCTTACAATTGTTGTTGCTTGTGTTCGACTTCGTATGTCCCGGGGTCCAGACATGATCAATATTTTGTCAGGTTTTCCACCACATCGTCAGGAAGACTCGATCATAGAGCAAGGGCTCCGCCATAATAGGGACACAAGTTTTGAAGGATATCCAAAAATGTTGTACTCTCAAATTGAAAAGAATATTTTAGGTGGTTCTTCAACTTCAAGTTGCTCTATTTGCTTAGGGGACTACAAAGAAAGTGACATTTTGAGGTTACTTCCTAATTGTGGCCATCTTTATCATGTTGCTTGTGTTGATTCATGGCTTAGGTTACATTCTACTTGTCCCATATGTAGAAAACCATTGCTAGCATCAAGCTAA 468 0.3953 MMNNNSTSPPQNNNDFDANGFTYILTFVFALVFLILTIVVACVRLRMSRGPDMINILSGFPPHRQEDSIIEQGLRHNRDTSFEGYPKMLYSQIEKNILGGSSTSSCSICLGDYKESDILRLLPNCGHLYHVACVDSWLRLHSTCPICRKPLLASS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04713 155 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Trre1g04713 155 SMART ring_2 106 147 IPR001841 -
Trre1g04713 155 SUPERFAMILY RING/U-box 105 152 - -
Trre1g04713 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 152 IPR013083 -
Trre1g04713 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 152 IPR045899 -
Trre1g04713 155 Pfam Ring finger domain 105 148 IPR001841 -
Trre1g04713 155 CDD RING-H2_EL5-like 105 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04713 Trre-Chr1 53104688 53105155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04713 2 148 C3H Transcription Factor Family AT2G35910 38.217 1.13e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04713 - - gmx:102663718 190.66