Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04712 ATGAACATTCATGATGAAAACTTTAGAAGAATGGGTTATTTCATCATATTTGTTGTATGTTTAATAATTGTAACACTTTTAATTACAATTGGCTCTTATGTATGCACCTTGCCCTACATTTCTCCAACTCGACCTCCTCAGCCGGTTGCGCGCGACACAAACCACGCGACCATTAATGTTGTAGCGGAACCAACTAATCAACCATCGCGCTTGGATGATCAAAATACAACAAATGTGTGTAGAAGCTATGACCAAAATGGTACTCTACCATATTTATCTGAAGTGAAATTGTGTAATAGCAAAAATATTAATTCAAGTAGTAGTTGTTGCTGTTCTATATGTTTGATGGATTACAAAGAAGCTGATTTGTTGAGAATGCTTCCTGGTTGTGGTCATTTGTTTCATGTGATGTGTGTTGATCCTTGGTTGAGAATGAATTTGACTTGCCCTGTTTGTAGGAAGACATACCAATCAGTATAA 480 0.3646 MNIHDENFRRMGYFIIFVVCLIIVTLLITIGSYVCTLPYISPTRPPQPVARDTNHATINVVAEPTNQPSRLDDQNTTNVCRSYDQNGTLPYLSEVKLCNSKNINSSSSCCCSICLMDYKEADLLRMLPGCGHLFHVMCVDPWLRMNLTCPVCRKTYQSV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04712 159 Pfam Ring finger domain 111 153 IPR001841 -
Trre1g04712 159 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Trre1g04712 159 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 155 IPR045899 -
Trre1g04712 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 158 IPR013083 -
Trre1g04712 159 SMART ring_2 111 152 IPR001841 -
Trre1g04712 159 SUPERFAMILY RING/U-box 110 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04712 Trre-Chr1 53102631 53103110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04712 7 155 C3H Transcription Factor Family AT5G06490 35.802 8.60e-24 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04712 - - cam:101490155 202.986