Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04701 ATGGATCAGAAGGATATTGTAAGATTCTTGACTACAACAATTGATAGTTTTATTCAAGATAGATTAATCAACAAAGAACAAAGAACACAACATAAAGATCAATGTGCTGAAAGGTTAGCAGCTGAAGATGAAAATGGTGACAAAGAAACCGAGGTAGAATATTCGGATCAGGCAGTATTGGCAAATCTAGATTGGGGTATTGAAGCTCTTGAAGAAGCTATTAATACCTATAATATGGAAACTAAGCTTGCAAGATTAGATTATGCTGAGAAAATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGTGTGCCAAATTCATATTTATCAGCTTGGGCACATTTAAATTTATCCTATTTATGGAAATTGAGGAACAATATTCAGAGTTGTATTTTTCATGCTCTTGAGATGTTCATCGTTGATCCGTTTTTCGCTAGGATTGATTTCGCGCCTGAGTTATGGAAAAACCTGTTTCTTCCACATATGAGTTCAATTGTAGGGTGGTATTCAGAGGAGAGACATAAGCTTATGATAGAAGTGATGCCTGAATCTTCTGATTTTTCTTATACTGGTGATTTTGATAAAGTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCGAATCAACTAGATAAATTGCAAAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACAAAGCTATATGCAAAATATTATAATGATTGTATGAACTCTGATTCTACCTCAAGTAAGAAGGTTATTCCGATGTTGCCGATTGCTGAGCCTCCGATGACTCCTTTGCATGAGTTGAGCCGGTCTGTTCCTGATTTCGTAAAATTTGGTCCTATTTTGCCTAAGAGCTCTGGATTTTCTATGACAACAAGAAGATCTAATGATGGTTTAAATGAAACAACCAGAGAGAATTTAACTTCCAATTCCAACAATTCAAAGGGGGAGAAATCATCCATGTGGGGTGCTAAGGAGAGCATAATTGAAGAGATTGAAGATGATTCAGATTCCGAGCATTATGACGCGTCTGTGGATTCTGATAAAATCAATATTTTCTCACCCGACTTGAAGACAAATATCAAGGATGAGGATGTTGAACCAAAAGTATATCGATCAAACCAGAAGGATCAAATGCAATCTCCTAACATCTCTCCTATGGAATCCCCAAGAGCTGCTCGAAATCGTTCATCTACAAATCCTCATATCCAGAGGAAAAAAGAATCAAAGTTTTTGCGGTTACTATCTAATCGTTTTAAGGGATCAACTATTTCTGATCACTCTCTATCATCATCGCCTGACACAAGCTCTGATCATATTTTCAACGGTGATGAAGAAGAAGCGATGGTCTTGAATAATATTAAGAGGAAAAATGATAGTCAAACAGCAAGTGTGAATCAAGACCATGAGAATAGTCTGGTGCTGAATGACAGTTCCCATTGTGAAAGTGAGGATGGATATCAAAGCTCTACTTCATTTCCAAAATTAGGGAAACTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGTGATCCTGTCACCCTTGAAACAGGCCAAACTTATGAAAGAAAAGCGATTCAAGAGTGGCTCGGAACAGGAAACACGACATGTCCGATCACGCGGCAGCCTCTATCTGCAAACATCTTACCGAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAAAGAACAGCATCCTGAACTAGCTCAAGAATTCTCAAATTCCAACACGCCAAGGGGTTCTTCATGTTCTCCATCTGCAAAAGACATCGCAATGATTTCGACTATACAAAGAACAACCGATTCACCAAGTCAGAAGTACAAAGAAGATTATATTAGACAACGGAACAATAGGTTTACAAGGGTTGCTGTCGGTGCATCTCCAACTAGTGTGCTATCTCAAGCTGCAGTTGAAACGATTATAAATTCCTTGACTCCTTACATCACAAGACTGTGTACATCAGAAAACTTGCAGGACTGTGAAGAAGCTGTATTGGAAATAGCGAGATTGTGGAAGGACTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAGTGGTTTAGTGGAAATTCTCTCAGCTTCTCTTAATAGAGAAGTTCTGAGAAGATCGATATATATTCTTTCCGAACTAATTTTGGCAGATGAAAGAGTTGGAGAAACACTTAATAGTGTAGATTCTGATTTCGATTGCTTGGCTACTCTACTTAAGAATGGTTTGTTTGAGGCTGCACTTCTTATTTACCAACTACGGCCAGTTTTTGCTCAGCTTTCGGAACATGAACTTATACCCTCTCTTATCCAAGTGATCCAGAACAAAAATGAGGATATAGATGGTTTTCAGTTATCTATAGACCCCGGAGATGCTTCCATAGCAATTCTCGAGCAAATTTTAATGGGAGGGGATGAATATAACAGGTCTGTCAATGCTTCAAGTGTTATCTCGGCAAATGGAATTCCAGCCATAGTAAAGTATTTGGACAGAATGGAAGGAAGGAGGTCTGTCATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGATCTCAATAGCAAATAGAATTGAATTGTCGCCTATTCTTGAATTATTTCATGCTGGAAATGATAGCGTGCGAGGAATCTGTGTGGAGTTTCTCTCAGAACTGGTTCGATTGAATAGAAGGACGTTCAGCAATCAGATATTACAGATAATCAAAGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAACATCAAATTGCTGTTTCCAGTCTTCTTATTCAGCTAGATCTTTTGGTTGAGCCACGTAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTTTCAAATAATCAGATGAAGGCTTTAGATGCTTTACTATTTCTTATCGGACACGTCACTTCCTCAGGAAAGTCGTATACTGAAGCTTGGTTGCTGAAGGTTGCAGGATTTGATCAACCTTACAATGTTTTAATGAAAGCCGAGCAATTGGGACACCATGACAATGATTTTATGGAAACAATGGAGGATGAAAAAAATGCCATGAAATCTTGGCAGAAAAGGGTAGCTTCTGTACTTTGCAATCATGAAAACGGCTCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCATTAAAGATGGCAAAATCATGCCTTGTTCTGGCCACATGGCTCACACACATGCTCTTTGCTCTACCTGATACTGGCGTAAGGGATATTGCTCGGAAATCCCTGCTCGAGGCACTTATAAATGTCCTCCAGTCATCCAAGAACCTAGAGGAAAAGATCCTTGCTACTCTAGCTTTGAAGTCTTTCATTAGTGATCCAACTGCTCATGAAGCACTTAGAGTTTATGCTAAAAGCATCTATAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTTGCAGCTGATATTTTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTGAGCTCAAACGGAGAAGTTCTTTCTTTGCTTTACCTCAATGGTCAGGTCTTGAGTGGACATGCTGATGGAACTATCAAGGTATGGGACGCAAGGAAAAGAATACCGCGAGTAATTCAAGAAACTCGTGAGCACAAAAAAGCTGTTACATCACTTTGCTCTTCTGCTGATAGACTATACAGTTCTTCCTTGGACAAAACAATCCGGGTTTGGACGATTAAACCTGACGGGATTAAATGTATAGATGTTTATGACGTTAAGGAGGCAGTGTATGAACTAGCAGCCAATGCTGAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTAAGGTTTTTAATTGGTTGGATACTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGTCTCGCTGTTGCTGGGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTATCGAAATATACATCAACTTCATTCTTCACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACATTCCATTCAAATTCATGATGATTTCCTCTCTGCTTGTGGTTCTTCTGTTGATGGAACTGCAGGAAAGATATTTTCACTTTCCACCAAAATGGTGGTGGGATCACTCTCAACTGGACTCGACATCCATCGTGCAGCCATCAACAGTGACTTCATATTTGCTGGTACAAAATTTGGCACCATTGAAGTTTGGCTGAAAGATAAGTTCACCCGAGTCGCTTCCATCAAAATGGCAGGCGGTCACACAAAAATTACATCATTAGTGTCAGATGTTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTAGATTAA 4449 0.3864 MDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDENGDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQSCIFHALEMFIVDPFFARIDFAPELWKNLFLPHMSSIVGWYSEERHKLMIEVMPESSDFSYTGDFDKVFNESLVFSMRPNQLDKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSTSSKKVIPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMTTRRSNDGLNETTRENLTSNSNNSKGEKSSMWGAKESIIEEIEDDSDSEHYDASVDSDKINIFSPDLKTNIKDEDVEPKVYRSNQKDQMQSPNISPMESPRAARNRSSTNPHIQRKKESKFLRLLSNRFKGSTISDHSLSSSPDTSSDHIFNGDEEEAMVLNNIKRKNDSQTASVNQDHENSLVLNDSSHCESEDGYQSSTSFPKLGKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWKEQHPELAQEFSNSNTPRGSSCSPSAKDIAMISTIQRTTDSPSQKYKEDYIRQRNNRFTRVAVGASPTSVLSQAAVETIINSLTPYITRLCTSENLQDCEEAVLEIARLWKDSKTDPQIHSYLSKPTVISGLVEILSASLNREVLRRSIYILSELILADERVGETLNSVDSDFDCLATLLKNGLFEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKNEDIDGFQLSIDPGDASIAILEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRMEGRRSVISILLCCMQAEKSCKISIANRIELSPILELFHAGNDSVRGICVEFLSELVRLNRRTFSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLIQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAWLLKVAGFDQPYNVLMKAEQLGHHDNDFMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFALPDTGVRDIARKSLLEALINVLQSSKNLEEKILATLALKSFISDPTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSADRLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYELAANAELACYVTQGTGVKVFNWLDTPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSIQIHDDFLSACGSSVDGTAGKIFSLSTKMVVGSLSTGLDIHRAAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLFVGSSDGKIQVWALD 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04701 1482 Gene3D - 1294 1482 IPR015943 GO:0005515
Trre1g04701 1482 Gene3D - 647 1187 IPR011989 -
Trre1g04701 1482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1448 1482 - -
Trre1g04701 1482 MobiDBLite consensus disorder prediction 289 322 - -
Trre1g04701 1482 MobiDBLite consensus disorder prediction 363 411 - -
Trre1g04701 1482 MobiDBLite consensus disorder prediction 375 401 - -
Trre1g04701 1482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 589 IPR013083 -
Trre1g04701 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1448 1482 IPR001680 GO:0005515
Trre1g04701 1482 MobiDBLite consensus disorder prediction 424 440 - -
Trre1g04701 1482 MobiDBLite consensus disorder prediction 424 443 - -
Trre1g04701 1482 SUPERFAMILY WD40 repeat-like 1214 1481 IPR036322 GO:0005515
Trre1g04701 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1241 1273 IPR001680 GO:0005515
Trre1g04701 1482 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1481 - -
Trre1g04701 1482 SMART WD40_4 1234 1271 IPR001680 GO:0005515
Trre1g04701 1482 SMART WD40_4 1439 1480 IPR001680 GO:0005515
Trre1g04701 1482 SMART WD40_4 1191 1229 IPR001680 GO:0005515
Trre1g04701 1482 MobiDBLite consensus disorder prediction 289 323 - -
Trre1g04701 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1216 1229 IPR001680 GO:0005515
Trre1g04701 1482 Pfam U-box domain 508 578 IPR003613 GO:0004842|GO:0016567
Trre1g04701 1482 SUPERFAMILY RING/U-box 506 579 - -
Trre1g04701 1482 Pfam WD domain, G-beta repeat 1213 1229 IPR001680 GO:0005515
Trre1g04701 1482 Pfam WD domain, G-beta repeat 1240 1270 IPR001680 GO:0005515
Trre1g04701 1482 Pfam WD domain, G-beta repeat 1450 1479 IPR001680 GO:0005515
Trre1g04701 1482 ProSiteProfiles U-box domain profile. 506 581 IPR003613 GO:0004842|GO:0016567
Trre1g04701 1482 Gene3D - 1188 1293 IPR015943 GO:0005515
Trre1g04701 1482 CDD RING-Ubox_PUB 508 560 IPR045210 -
Trre1g04701 1482 SUPERFAMILY ARM repeat 652 1008 IPR016024 -
Trre1g04701 1482 SMART Ubox_2 510 574 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04701 Trre-Chr1 53029776 53036511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04701 500 904 U-box Gene Family AT1G23030 24.766 1.21e-18 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04701 - - gmx:100776142 2402.48