Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04696 ATGACTACATCAGAAGAAACTTCAAGTCTGAAACTATTGAGCCAACATCTTTTGGAGGATATATCAGACTCCTTTTTCACCAATCTCAAACATAATAGTTTTCTTGAAAGCCTTGGTTTTGAAGCTGATACAAAATTCATTGACTTCACTTCTCATGATAAGGTACAAAACTTGAAGGAAGAAAGACACTTTGAGGAAACACAGAAGAAGAAGTCAAATTTGGCAGAACCAATAGTGTTGGAGAAGAAGGAAGAAAGATGTTATGGAGGAAAGCATTACAGAGGAGTGAGGAGAAGGCCATGGGGTAAATTTGCCGCAGAGATTCGCGACCCTTCAAATAAAGGAAGCAGGGTTTGGTTAGGAACATTTAACAATGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGAATGAGGGGTCAGAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTAAAGCTAATCCAATACCTAATAACAGTATCTGTGGAAGGAAAAGGAGAATACATCAGAGAGATGCTGTTACAAGTTCAAGTTAA 546 0.381 MTTSEETSSLKLLSQHLLEDISDSFFTNLKHNSFLESLGFEADTKFIDFTSHDKVQNLKEERHFEETQKKKSNLAEPIVLEKKEERCYGGKHYRGVRRRPWGKFAAEIRDPSNKGSRVWLGTFNNEIDAAKAYDCAAFRMRGQKAILNFPLEAGKANPIPNNSICGRKRRIHQRDAVTSSS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04696 181 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Trre1g04696 181 PANTHER DNA-BINDING DOMAIN 64 159 IPR044808 GO:0003700|GO:0009873
Trre1g04696 181 FunFam Ethylene-responsive transcription factor 2 91 152 - -
Trre1g04696 181 CDD AP2 91 150 IPR001471 GO:0003700|GO:0006355
Trre1g04696 181 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Trre1g04696 181 SUPERFAMILY DNA-binding domain 92 152 IPR016177 GO:0003677
Trre1g04696 181 Gene3D AP2/ERF domain 91 152 IPR036955 GO:0003700|GO:0006355
Trre1g04696 181 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Trre1g04696 181 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Trre1g04696 181 PRINTS Ethylene responsive element binding protein signature 132 152 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04696 Trre-Chr1 53002746 53003370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04696 1 170 AP2-EREBP Transcription Factor Family AT5G07580 44.385 1.15e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g04696 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04696 - - gmx:100499732 206.453