Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04694 ATGTTCAGTGTCGGTGTGCGCCTGTGTGTCAACACTGATGTAAATTCTGATGTCTTCTTCATTTCCGGTGTGGTGAAGCCGTTGGTTGAGCTTGTTGCTGAGCAAGGGAATGGGATGATTGAGAAAGTAATGGTGGTGTTGAATAGTTTAGCAGGAATTGAAGAAGGTAAGGAAGCTATTGTTGAAGAAGGTGGAATAGCTGCTCTTGTTGAAGCCATTGAAGTTGGGTCTGTGAAAGGAAAGGAATTTGTGGTTTTAACTCTTCTTCAGCTTTGTGCTGAGAGTGTTACAAACAGAGGGTTACTTGTTAGAGAAGATGGAATTCCTCCTCTTGTAGCTCTTTCTCAGAATGGAACTCTTCGAGCTAAGCATAAGGCTGATACGCTCCTTCGATACTTGAGAGAATCAAGACAAGAAGCATCAACTTCGACCATAAAGCTTGTAACACTTTAG 453 0.4238 MFSVGVRLCVNTDVNSDVFFISGVVKPLVELVAEQGNGMIEKVMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEVGSVKGKEFVVLTLLQLCAESVTNRGLLVREDGIPPLVALSQNGTLRAKHKADTLLRYLRESRQEASTSTIKLVTL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04694 150 Gene3D - 6 147 IPR011989 -
Trre1g04694 150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 23 65 IPR000225 GO:0005515
Trre1g04694 150 SUPERFAMILY ARM repeat 8 143 IPR016024 -
Trre1g04694 150 PANTHER U BOX DOMAIN-CONTAINING 22 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04694 Trre-Chr1 52932841 52934673 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04694 22 138 U-box Gene Family AT5G67340 51.282 1.06e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04694 - - tpra:123898555 218.009