Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04693 ATGCTTCAACCAAAATTGGCGTGTACTCACATCATTTCCGGTGTGGTGAAGCCGTTGGTTGAGCTTGTTGCTGAGCAAGGGAATGGGATGATTGAGAAAGTAATGGTGGTGTTGAATAGTTTAGCAGGAATTGAAGAAGGTAAGGAAGCTATTGTTGAAGAAGGTGGAATAGCTGCTCTTGTTGAAGCCATTGAAGTTGGGTCTGTGAAAGGAAAGGAATTTGTGGTTTTAACTCTTCTTCAGCTTTGTGCTGAGAGTGTTACAAACAGAGGGTTACTTGTTAGAGAAGATGGAATTCCTCCTCTTGTAGCTCTTTCTCAGAATGGAACTCTTCGAGCTAAGCATAAGGCTGATACGCTCCTTCGATACTTGAGAGAATCAAGACAAGAAGCATCAACTTCGACCATAAAGCTTGTAACACTTTAG 426 0.4202 MLQPKLACTHIISGVVKPLVELVAEQGNGMIEKVMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEVGSVKGKEFVVLTLLQLCAESVTNRGLLVREDGIPPLVALSQNGTLRAKHKADTLLRYLRESRQEASTSTIKLVTL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04693 141 SUPERFAMILY ARM repeat 13 134 IPR016024 -
Trre1g04693 141 Gene3D - 5 138 IPR011989 -
Trre1g04693 141 PANTHER U BOX DOMAIN-CONTAINING 13 125 - -
Trre1g04693 141 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 14 56 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04693 Trre-Chr1 52932841 52934783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04693 11 129 U-box Gene Family AT5G67340 51.261 8.11e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04693 - - tpra:123898555 218.009