Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04686 ATGCCAGGCTTTCCTGTCGCGGCTGGTGAACCATGTAATTTTATAAGCACAGATCAACAACCTAGCCCTCTAGATGCTTCTGTGCAATTATCTGCCGAAGAGAAAGTTGTTGCAGAACAGAGTCTTTCAGTTTATTGCAAACCTGTAGAGTTTTACAACTTTCTTTATCACCGTTTTCTGCAACGTACTCCATCTTTCATTCCGAGATGTTTAGAGTACAGGAGAGAGGCTAGGAGAGAGAAAAGGACACAAATGACAGTTATGCTGTCATGGAATGATGAAGAAACTCAAAATGTGTGTCCTTTGTATATCGGTCTGGCAAGGCGTGATCCTAATAATGAAGATGCTGATATATATACCTTTCGAGGTTCCTCTGGCATTGACGGGAACTATAAAATCAGAGCAGAGTTTGTGCTCTTGGAAGTTAATGAGTTAGCTGCGGACGGCTCACTTTTTCTCTTGTTTTTCACCACTGAGGGAAATTCAAATTCATCATCTAGAGTCAATGCAAGTCTGGGGCCTTATGATCCGACTTCTCATGAATCAATAGCTGAAAAGATCTGCTTATACGAGAAAATTTCTTTTCAATCAATTTATATGGCTTGGGATAGTTCTCCAAACTTCCGTTGGGGACAACGAGCTGAGATTATGACTACTCTTGATCTGCTTCCATGTATTTTGAAGTATGATGTTCTAAACAAGGGCACGACTATTGCAATCCAAGATCTCCGGAATTCTGAGATTGTGAGTACATCAAAGAATGTTCAAATCAAAATCTTTGCTGAAGAGTTCAGGGGCATGGAGAAATCTGTCAACTATACAAATGTCAGGATTAATGTACCATCATCATCGTCGTCATCTGCATCTAGTCTGACTCGGTTGAAAGAAGGAAGAGTGATATTTTATTACAGGTATTTCAATAACAAATTGCAGAGAAAAGAAGTCACTGAAGATTTCTCCTGTCCATTCTGTTATTTAAGATGTGCAAGCTATAAGGGTCTAAGATGCCATCTGCTCGCATCACATGATCTTTTCAAGTATGAATTTTCGGCATCGGAACATTGTCTGGCTGTTAATGTGTCTTGGAATCGTGATACCTGGAGAACTGAGATTATTGGAGATGATGTTGATCCAAGATTGCAAACTTTTTACCTTCGTTGCAAGCGATACAAGCACACAAGTCCAGAAGTTGCATGTTTTGAAGAGTTCCAGGGTGCTGACTCACCGGCCTTAGCTAATAATGCCGACCCACCGGTCTTTGCTATGGATGTTGATCCACCGGTCTTTGCTATGGATGCAGACCCACCGGTCCAGACTATGGGTGCAGACCCGCCGGTTTTATTTAAGGGTACAGACCCACCGAACTTAGCTATTGATGCAGACCCACCGGTCTTAACTATGGGTGCAGACCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCAGACCCACTGGTCTTAACTATGGATGCAGATCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACATAGCTATTGATGCAGACCCACTGGTCCTAACTATGGATGCAGACCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCAGACCCACCGGTCTTAACTATGGATGCAGACCCACCGATCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCGGACCCACCAGTCTTAGCTATTGATGCGGACCCACCGGTCTTACCTATTGATGCAGACCCACCAATCTTATCTATTGATGCAGACCCACAGGTCTTAGCTATTGATGCGGACCCACCGGTCTTAGTTATGGATGCGGACCAACCGGTCTTAGCTATTGATGCGGACCCACCACTCTTAGCTACGGATGCAGACCCACCAATCTTAGGTATTGATGCAGACCCACCGGTCTTAGGTATTGATGCGGACCCACCGTCCATAGCTACGGATGCAGACCAACTATTCTTAGAGTCTGAAAATCCTTCAGGAGATATTGAGTTTTTGAAGAAGGCTGATGGAAATTCTGCAACTATATCAGGAGTTGCAAATGAAAATGTTGTATCCAATCCCGATCCAGATTGTGTCCCACCAATATCTGAGCATGATCATGTGACTCCTGCAGTGCCACAGGTTGACAATGCAGCGAAGTTAGACAAACAAAGCATAGCCCAGTTGCAGAAGCGAAAGTTTTATCATTCTCACAAAGCCCAGGCAATGTCACTTGAAGAAGTTCTATCAGATTATGATAGTGAGAATGAAGTTGATCCTGAAGTTGAAGACATTGAAGAGCGAAGGAGGCTTAATCTTCATGATGTTAGCAAAGAAGAGAAGGAATTCATGTACATGTGGAACTCATTTATACGGAAGCAACGTGTGCTGGTAGATTCTCACGTTCGTTGGGCATGTAAGGCTTTCTCAATATTGCATGGCACTGAGCTCGTTAAATCCCGTGAATTATCTTGGCATTGGAGAATGTTCAGGCTCAAATTATACAATTTTGGTCTTATAGATGGAAAGGTCATGAACGATTGCAGTATTATTCTCGAACAATACGAGAAGAATAAATCAAATCCTGAGAGCCCAATAGCTAATATAAACTCCATTCTTTTGACCCCTCGTAAAAGTAAAAGAAAAAAATGA 2661 0.4303 MPGFPVAAGEPCNFISTDQQPSPLDASVQLSAEEKVVAEQSLSVYCKPVEFYNFLYHRFLQRTPSFIPRCLEYRREARREKRTQMTVMLSWNDEETQNVCPLYIGLARRDPNNEDADIYTFRGSSGIDGNYKIRAEFVLLEVNELAADGSLFLLFFTTEGNSNSSSRVNASLGPYDPTSHESIAEKICLYEKISFQSIYMAWDSSPNFRWGQRAEIMTTLDLLPCILKYDVLNKGTTIAIQDLRNSEIVSTSKNVQIKIFAEEFRGMEKSVNYTNVRINVPSSSSSSASSLTRLKEGRVIFYYRYFNNKLQRKEVTEDFSCPFCYLRCASYKGLRCHLLASHDLFKYEFSASEHCLAVNVSWNRDTWRTEIIGDDVDPRLQTFYLRCKRYKHTSPEVACFEEFQGADSPALANNADPPVFAMDVDPPVFAMDADPPVQTMGADPPVLFKGTDPPNLAIDADPPVLTMGADPPVLAKDTDPPNLAIDADPLVLTMDADPPVLAKDTDPPNIAIDADPLVLTMDADPPVLAKDTDPPNLAIDADPPVLTMDADPPILAKDTDPPNLAIDADPPVLAIDADPPVLPIDADPPILSIDADPQVLAIDADPPVLVMDADQPVLAIDADPPLLATDADPPILGIDADPPVLGIDADPPSIATDADQLFLESENPSGDIEFLKKADGNSATISGVANENVVSNPDPDCVPPISEHDHVTPAVPQVDNAAKLDKQSIAQLQKRKFYHSHKAQAMSLEEVLSDYDSENEVDPEVEDIEERRRLNLHDVSKEEKEFMYMWNSFIRKQRVLVDSHVRWACKAFSILHGTELVKSRELSWHWRMFRLKLYNFGLIDGKVMNDCSIILEQYEKNKSNPESPIANINSILLTPRKSKRKK 886
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04686 886 CDD ZnB-Zn_EMF2-like 292 367 - -
Trre1g04686 886 CDD VEFS-box_EMF2-like 732 858 - -
Trre1g04686 886 PANTHER POLYCOMB GROUP PROTEIN 29 866 - -
Trre1g04686 886 Pfam VEFS-Box of polycomb protein 724 853 IPR019135 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g04686 Trre-Chr1 52863942 52879387 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04686 643 859 C2H2 Transcription Factor Family AT5G51230 42.727 3.32e-40 156
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04686 - - psat:127098431 1181.01