Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04685 ATGCCAGGCTTTCCTGTCGCGGCTGGTGAACCATGTAATTTTATAAGCACAGATCAACAACCTAGCCCTCTAGATGCTTCTGTGCAATTATCTGCCGAAGAGAAAGTTGTTGCAGAACAGAGTCTTTCAGTTTATTGCAAACCTGTAGAGTTTTACAACTTTCTTTATCACCGTTTTCTGCAACGTACTCCATCTTTCATTCCGAGATGTTTAGAGTACAGGAGAGAGGCTAGGAGAGAGAAAAGGACACAAATGACAGTTATGCTGTCATGGAATGATGAAGAAACTCAAAATGTGTGTCCTTTGTATATCGGTCTGGCAAGGCGTGATCCTAATAATGAAGATGCTGATTATTCTGCTGTTTATCTACTCAGTCAGATATATACCTTTCGAGGTTCCTCTGGCATTGACGGGAACTATAAAATCAGAGCAGAGTTTGTGCTCTTGGAAGTTAATGAGTTAGCTGCGGACGGCTCACTTTTTCTCTTGTTTTTCACCACTGAGGGAAATTCAAATTCATCATCTAGAGTCAATGCAAGTCTGGGGCCTTATGATCCGACTTCTCATGAATCAATAGCTGAAAAGATCTGCTTATACGAGAAAATTTCTTTTCAATCAATTTATATGGCTTGGGATAGTTCTCCAAACTTCCGTTGGGGACAACGAGCTGAGATTATGACTACTCTTGATCTGCTTCCATGTATTTTGAAGTATGATGTTCTAAACAAGGGCACGACTATTGCAATCCAAGATCTCCGGAATTCTGAGATTGTGAGTACATCAAAGAATGTTCAAATCAAAATCTTTGCTGAAGAGTTCAGGGGCATGGAGAAATCTGTCAACTATACAAATGTCAGGATTAATGTACCATCATCATCGTCGTCATCTGCATCTAGTCTGACTCGGTTGAAAGAAGGAAGAGTGATATTTTATTACAGGTATTTCAATAACAAATTGCAGAGAAAAGAAGTCACTGAAGATTTCTCCTGTCCATTCTGTTATTTAAGATGTGCAAGCTATAAGGGTCTAAGATGCCATCTGCTCGCATCACATGATCTTTTCAAGTATGAATTTTCGGCATCGGAACATTGTCTGGCTGTTAATGTGTCTTGGAATCGTGATACCTGGAGAACTGAGATTATTGGAGATGATGTTGATCCAAGATTGCAAACTTTTTACCTTCGTTGCAAGCGATACAAGCACACAAGTCCAGAAGTTGCATGTTTTGAAGAGTTCCAGGGTGCTGACTCACCGGCCTTAGCTAATAATGCCGACCCACCGGTCTTTGCTATGGATGTTGATCCACCGGTCTTTGCTATGGATGCAGACCCACCGGTCCAGACTATGGGTGCAGACCCGCCGGTTTTATTTAAGGGTACAGACCCACCGAACTTAGCTATTGATGCAGACCCACCGGTCTTAACTATGGGTGCAGACCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCAGACCCACTGGTCTTAACTATGGATGCAGATCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACATAGCTATTGATGCAGACCCACTGGTCCTAACTATGGATGCAGACCCACCGGTCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCAGACCCACCGGTCTTAACTATGGATGCAGACCCACCGATCTTAGCTAAGGATACAGACCCACCGAACTTAGCTATTGATGCGGACCCACCAGTCTTAGCTATTGATGCGGACCCACCGGTCTTACCTATTGATGCAGACCCACCAATCTTATCTATTGATGCAGACCCACAGGTCTTAGCTATTGATGCGGACCCACCGGTCTTAGTTATGGATGCGGACCAACCGGTCTTAGCTATTGATGCGGACCCACCACTCTTAGCTACGGATGCAGACCCACCAATCTTAGGTATTGATGCAGACCCACCGGTCTTAGGTATTGATGCGGACCCACCGTCCATAGCTACGGATGCAGACCAACTATTCTTAGAGTCTGAAAATCCTTCAGGAGATATTGAGTTTTTGAAGAAGGCTGATGGAAATTCTGCAACTATATCAGGAGTTGCAAATGAAAATGTTGTATCCAATCCCGATCCAGATTGTGTCCCACCAATATCTGAGCATGATCATGTGACTCCTGCAGTGCCACAGGTTGACAATGCAGCGAAGTTAGACAAACAAAGCATAGCCCAGTTGCAGAAGCGAAAGTTTTATCATTCTCACAAAGCCCAGGCAATGTCACTTGAAGAAGTTCTATCAGATTATGATAGTGAGAATGAAGTTGATCCTGAAGTTGAAGACATTGAAGAGCGAAGGAGGCTTAATCTTCATGATGTTAGCAAAGAAGAGAAGGAATTCATGTACATGTGGAACTCATTTATACGGAAGCAACGTGTGCTGGTAGATTCTCACGTTCGTTGGGCATGTAAGGCTTTCTCAATATTGCATGGCACTGAGCTCGTTAAATCCCGTGAATTATCTTGGCATTGGAGAATGTTCAGGCTCAAATTATACAATTTTGGTCTTATAGATGGAAAGGTCATGAACGATTGCAGTATTATTCTCGAACAATACGAGAAGAATAAATCAAATCCTGAGAGCCCAATAGCTAATATAAACTCCATTCTTTTGACCCCTCGTAAAAGTAAAAGAAAAAAATGA 2688 0.4297 MPGFPVAAGEPCNFISTDQQPSPLDASVQLSAEEKVVAEQSLSVYCKPVEFYNFLYHRFLQRTPSFIPRCLEYRREARREKRTQMTVMLSWNDEETQNVCPLYIGLARRDPNNEDADYSAVYLLSQIYTFRGSSGIDGNYKIRAEFVLLEVNELAADGSLFLLFFTTEGNSNSSSRVNASLGPYDPTSHESIAEKICLYEKISFQSIYMAWDSSPNFRWGQRAEIMTTLDLLPCILKYDVLNKGTTIAIQDLRNSEIVSTSKNVQIKIFAEEFRGMEKSVNYTNVRINVPSSSSSSASSLTRLKEGRVIFYYRYFNNKLQRKEVTEDFSCPFCYLRCASYKGLRCHLLASHDLFKYEFSASEHCLAVNVSWNRDTWRTEIIGDDVDPRLQTFYLRCKRYKHTSPEVACFEEFQGADSPALANNADPPVFAMDVDPPVFAMDADPPVQTMGADPPVLFKGTDPPNLAIDADPPVLTMGADPPVLAKDTDPPNLAIDADPLVLTMDADPPVLAKDTDPPNIAIDADPLVLTMDADPPVLAKDTDPPNLAIDADPPVLTMDADPPILAKDTDPPNLAIDADPPVLAIDADPPVLPIDADPPILSIDADPQVLAIDADPPVLVMDADQPVLAIDADPPLLATDADPPILGIDADPPVLGIDADPPSIATDADQLFLESENPSGDIEFLKKADGNSATISGVANENVVSNPDPDCVPPISEHDHVTPAVPQVDNAAKLDKQSIAQLQKRKFYHSHKAQAMSLEEVLSDYDSENEVDPEVEDIEERRRLNLHDVSKEEKEFMYMWNSFIRKQRVLVDSHVRWACKAFSILHGTELVKSRELSWHWRMFRLKLYNFGLIDGKVMNDCSIILEQYEKNKSNPESPIANINSILLTPRKSKRKK 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04685 895 PANTHER POLYCOMB GROUP PROTEIN 29 875 - -
Trre1g04685 895 Pfam VEFS-Box of polycomb protein 733 862 IPR019135 -
Trre1g04685 895 CDD VEFS-box_EMF2-like 741 867 - -
Trre1g04685 895 CDD ZnB-Zn_EMF2-like 301 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04685 Trre-Chr1 52863942 52879387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04685 652 868 C2H2 Transcription Factor Family AT5G51230 42.727 3.67e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04685 - - psat:127098431 1199.5