Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04682 ATGAAACAAGAGGTAGTACCTTTAACCACTTTAGTTAATCAAATGCCTGCAAATTTCAATGATCATCATGATGACATGAAGAATATGAATGCTATAAACCAATCCGTTTCGGGATTCAATTCTATTTCATCTCCTAATGTCATAGCCTCAGATATAAAACATAGTTTTGTTCCTCTAAATCTTTTGGAAACTCTCCCGGCATTAACAGAACCATCCATGCTATACTCATCAACATCTCATATCAAAAGTAATGAAATCATCTCAACAACTTCATATCCTACATATCCTATGTCACAATTTGGCCTAACTCAGCATCAACAAAACAATGGTTATGGATTTTATGATTCAAACAAAATGAATAAGAATATGATGGAAAACTTGCAATCCAAGTCTTTCAATGAGAATTGGTTGAGTACCACAAAGACTCAACCTATGAAGTATGGTGCAAGAGGGAAGCTTTTCAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCTGAAATTAGGCTACCGAGAAATAGGACTAGAGTTTGGTTAGGGACATTTGACACAGCTGAAGATGCTGCAATTGCATATGATACAGCAGCATATATACTAAGAGGTGAATGTGCTCAGTTAAATTTTCCAGATCTTAAGCATGTGATTCAAGCTAATTCATTGAACGGAACAACTGCTTCGCTCGTTGAGGCAAAACTTCAAGCAATATCACAACAAGGTGTTTCTTCTTCTCATAGAAAACAAAGGTCAAATAATAAGCACATTGATGAGGTTAAAAGTGGCAAGGATGAAGCTATGAAGGAACTGAAGGTTGGAGGTGGCACAAGTGACAGAAGCAAAAGTATGCAGAATGAAATATGTGATGTGGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGATTCATGA 945 0.3661 MKQEVVPLTTLVNQMPANFNDHHDDMKNMNAINQSVSGFNSISSPNVIASDIKHSFVPLNLLETLPALTEPSMLYSSTSHIKSNEIISTTSYPTYPMSQFGLTQHQQNNGYGFYDSNKMNKNMMENLQSKSFNENWLSTTKTQPMKYGARGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKHVIQANSLNGTTASLVEAKLQAISQQGVSSSHRKQRSNNKHIDEVKSGKDEAMKELKVGGGTSDRSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSDS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04682 314 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 46 309 - -
Trre1g04682 314 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Trre1g04682 314 PRINTS Ethylene responsive element binding protein signature 176 192 IPR001471 GO:0003700|GO:0006355
Trre1g04682 314 Gene3D AP2/ERF domain 153 211 IPR036955 GO:0003700|GO:0006355
Trre1g04682 314 ProSiteProfiles AP2/ERF domain profile. 153 210 IPR001471 GO:0003700|GO:0006355
Trre1g04682 314 MobiDBLite consensus disorder prediction 239 265 - -
Trre1g04682 314 SMART rav1_2 153 216 IPR001471 GO:0003700|GO:0006355
Trre1g04682 314 MobiDBLite consensus disorder prediction 249 265 - -
Trre1g04682 314 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Trre1g04682 314 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Trre1g04682 314 FunFam Ethylene-responsive transcription factor 2 152 211 - -
Trre1g04682 314 CDD AP2 152 212 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04682 Trre-Chr1 52839241 52840272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04682 45 309 AP2-EREBP Transcription Factor Family AT4G13620 43.986 4.68e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g04682 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04682 - - gmx:100820013 350.517