Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04678 ATGAATTCGAATGAGGAGATGGTGCCTAACCATGATACCGAGAGAAGCCAAGAGTCTCACCTAGTCACGACAAAGGTGCAACACCAATCACAGAACACTAATACCACCATCATCAACAACCACCATGCATCACCATCTGCTCCTGGCCTCCGGCCGCGGGGTCGTCCACTTGGATCGAAAAACAAGCCCAAGGCGTCTGCCATGGTACCATGTGACGTCCCCAATATACTTTGTTGTGAAATACTTAAGGTTCCCCATGGAGTTGACCTGTCAAAGGCTATTAAAGATTACATTTGTCGCAAAAAGAGCTCCATATACATCATGAGTGCAAATGGATGTGTGGACCAAGTCACACTTCATACAAAAATAGGGGAAATCATAACTTTTCAGGAAAAGTTTGATATTGTTTCCATGTCAGGATCAATTCTCCTGCCGCCGAAACCAACAGATGCAGGAGTGAGCATTTGTTTGTCAAGAAATAAAGGAGAAGTGGTTGCGGGGGATGTGATTCCCCCTCTTGTGGCTTCAGGCCCAGTATTGTTAACTGTTTGTCCCCTTGCAAACACTGCATCTGAAAACATATCTCAAGAGATATATAACCAAGAGGAACATGAACCTGTATGCCCCGTTGCAGATGAGCACATGGCAAAAGATGGCGATGACTTGTTAGATGCTGAAGGATTACTTAATGGAATGGAGAACATGAAGAGTAGCAACGTCAGCGATCCCTCTTCCTCCACTCAGGGTCCTATGTTTTAA 759 0.4506 MNSNEEMVPNHDTERSQESHLVTTKVQHQSQNTNTTIINNHHASPSAPGLRPRGRPLGSKNKPKASAMVPCDVPNILCCEILKVPHGVDLSKAIKDYICRKKSSIYIMSANGCVDQVTLHTKIGEIITFQEKFDIVSMSGSILLPPKPTDAGVSICLSRNKGEVVAGDVIPPLVASGPVLLTVCPLANTASENISQEIYNQEEHEPVCPVADEHMAKDGDDLLDAEGLLNGMENMKSSNVSDPSSSTQGPMF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04678 252 CDD DUF296 81 186 IPR005175 -
Trre1g04678 252 Gene3D - 80 204 - -
Trre1g04678 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 194 - -
Trre1g04678 252 ProSiteProfiles PPC domain profile profile. 74 207 IPR005175 -
Trre1g04678 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 226 IPR014476 GO:0003680
Trre1g04678 252 MobiDBLite consensus disorder prediction 1 66 - -
Trre1g04678 252 MobiDBLite consensus disorder prediction 22 43 - -
Trre1g04678 252 MobiDBLite consensus disorder prediction 233 252 - -
Trre1g04678 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 185 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04678 Trre-Chr1 52807211 52807969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04678 49 197 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 37.888 2.02e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04678 - - psat:127088334 170.629