Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04667 ATGAGTAATGAGGATCCTGGAATTTCAGGCAATAATTATAGAGGTATAGTGAGTGTTGGGTTTAGCGACATAAGCCCTTCTGGTAAAGATGATGAAGATAATGTATGTCATCAGACCGGTGAAGAATTTTCTTCCGAGTTCTTACGCGATCGGGTTGCTTTAAGGAAGTTTCCTGTCATACCTGATGTAGAGCAGCGCCTGCCAAACATATTGAACTTCAATAATAACAATTTTCAATTGGTCTACGAGGATCAACATCATGTCCTTGGTCTTGGGAGAATGGATTCTGATAGCAATTTGGATTTGTCAGAGATTGCTTCGGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCTTATCATAATAATTTGAGCAAATACCAGTGTGAACATGGTGGTACCAGACAAGCATCGAGTACATTTTCCAGACAATCATCAAGTAGGTTTTCGGACGAATGCGATCAATTTGCCTCAGGATCAAATAGTTGTATCAGACAAACATCGGGTGCATTTTCCAGACAATTATCAAGCAGGTTTTCTGACGGATGCGATCAAGTTGCCTCGGGACCAAATACTCCGTCTATTTATGCCGGTGAGTCTCCTCGTTCGTGCCATCCTTATGGAACAGTATTCTCAGAAGGTTCCTTCAAGAAAATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGACCAAATGACGGGAAACTCAGATATGTGGGTGGAGAGACGCGGATTATATCGATCAGGAGGAACATCACACATGAAGAACTTACGGGGAAGACTTCTGGTATTTGCAATCAAACTCACATCATCAAATACCAACTTCCTGGAGAGGATCTTGATGCTCTTATATCTGTTTGTTCTGATGAGGATCTTCATCATATGATCGAGGAATACGAAGAGCTTGAAAGAGCTGGAGGATCTCAACGACTTAGGATTTTTCTTATACCTTCAAATGAACTTGAGAGTCCAAGCTCTAATGAATCAAGAGTCAATCAACAAAGTGATGTTGATTACCATTATGTTGTTGCTGTTAATGGTATACTAGATCGAAGTCCGCGAAAGAATCCTGGTGGACTAAGTCTGGCAAGCCATACAAGCCAATTTGCAAATACTTCTGATTACAACAATCTACACTTCCATAGGGAATCATCCACATATGCATTTGCTTCCGAGGTAAAGGATTGCAACCCAACCTCTTCAAATTTGGCAGAGATAATGTCAAAACCAGGTCCATTTTTAGCATCAGTTAAGGTAGGGGGGAAGTCATTTAATCAAACACATCTATCTGCCATTTGTGTGCAGCCTAAAGATCAAACAAATTCTAAAGTTCAGTTATTTACGGATCAATCATATAATGTTGTTAATGAAAACATTATACCCTATGCCATGGAAAATATTCCACGTGACAACTCTTTGTATGTGGATAATACCGGTTATGCTGATCCCATTACATATTATAACAATCTTACCCAAGGGTCTCCATGTGTGAACTATCATCCTAGTAATCAATATACATTGGAGTCTGACCAAGACAGGAAGTCTAATGTTGAATTTAATTTTCACAGACGAACCAATAGTAAAGAATTTGTCTCTCCTGTAATTTGTAATCAAACTGATATGATATTTGAGAGACCTTTAGTTAATAATGAAGGTTCATACCATTTTAACAATATTGTCTCTCATCCTCATGAGTCAGCGAGTGTCTTTTCGGTGTCTGGCGATAGGGATGTATCTCAATACAAAATGTTGCATACTCTTTCCGACTCAACGCTTCTGGAGAATAATGAAAATTTCAAAGGCCACACACAATTTCCGTTTAATGTTGAGCGAGAAAAACTATCATCATTGGACACTTCAAGTTCTTTTGAGGAATGTTCAATACAGCCAGGAGAGATAAATGATGGGAGAGAGCATATGGCTTTACATCAAAACCCACCCAATTTTGGAATGACTGATAGTTGCAAGAGATTGTCAGAAATTGGCAGAGAAAAATTACAACATGCAAATAAAAGTGTTGATTGGCTCGATGAAAAAATTGGACCTACGCCACAAAATTTACAGTACATCTGCTACCAACATGGTGCTTGCTCATCTTCACCGGACTTACAAAGTAGTGAATGCAATGCATCTGCTGCACCATTTATCCCTTCACAATCTACTAGAAGCATCACAGAGCAACCACATGGTATACCATTAGACACAATTGCTTCGGAGTTTTCTATGAGGAGCCAAAACTCATCAATGCATCGCCAATTTATTGTGTCGGAGACAAAATATGGTCATCCACCTCCGCCTGACTCTTTTGAGTTACGACCTACTAACTCCCTAGTCGTCACAGAGTCTGTATTACCAATCTCATATCCAGATATGGTTTATTCTTCACTAAGAGAGGTTGTTGTCCCTGGTGATGATCTTGCATACTACCAGAACCAAAATGAAGAAAATATAGTCAATGACAAACAATCTCATGAATACATTGATGAATTTTGCATCAACAAGCCAGAATCAACAACAATTGTCACAGAGCCAATTGATTATATTTCTTCAGGTATCCGGTCATGCTTACAAGTTGTCTCAAATATAGATAAAGAGGACAAAGTTGAACATACTTCTCCTACAAAGGCAGGGGTAGTGTTTGTTAATCATGAATCTGATAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAGGTCTATTGGTGATTCAGAAACTGCTGAAACAGATTCTGAATTGTATGGTTTGCAGATTATTGAGAATGGCGATCTTGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGGAAATGGAGGGGAACCGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCGCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCAAAGATCCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGATCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATTTGGGCGATCCGGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAATTATTGGATGGCAACAGTTGTAGAGTATCTGAGAAGGTCGATATTTTCTCATTTGGTATAGCAATGTGGGAAATCTTGACCGGGGAAGAACCGTATGCTAATATGCACTGTGGTGCCATCATAGGAGGTATTGTCAGTAACACGCTCAGGCCATCTATTCCGAAACGATGCGATTCCGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGCCCTGATCCAGAAGCCAGACCATCATTCACAGAAGTTAAAAATAGACTCCGCAACATGTCAGCGGCACTGCAAAAAAAGAGACCTAACGTTAGGAGTCGATGA 3621 0.3993 MSNEDPGISGNNYRGIVSVGFSDISPSGKDDEDNVCHQTGEEFSSEFLRDRVALRKFPVIPDVEQRLPNILNFNNNNFQLVYEDQHHVLGLGRMDSDSNLDLSEIASARGYVAEADNRAYHNNLSKYQCEHGGTRQASSTFSRQSSSRFSDECDQFASGSNSCIRQTSGAFSRQLSSRFSDGCDQVASGPNTPSIYAGESPRSCHPYGTVFSEGSFKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRRNITHEELTGKTSGICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNELESPSSNESRVNQQSDVDYHYVVAVNGILDRSPRKNPGGLSLASHTSQFANTSDYNNLHFHRESSTYAFASEVKDCNPTSSNLAEIMSKPGPFLASVKVGGKSFNQTHLSAICVQPKDQTNSKVQLFTDQSYNVVNENIIPYAMENIPRDNSLYVDNTGYADPITYYNNLTQGSPCVNYHPSNQYTLESDQDRKSNVEFNFHRRTNSKEFVSPVICNQTDMIFERPLVNNEGSYHFNNIVSHPHESASVFSVSGDRDVSQYKMLHTLSDSTLLENNENFKGHTQFPFNVEREKLSSLDTSSSFEECSIQPGEINDGREHMALHQNPPNFGMTDSCKRLSEIGREKLQHANKSVDWLDEKIGPTPQNLQYICYQHGACSSSPDLQSSECNASAAPFIPSQSTRSITEQPHGIPLDTIASEFSMRSQNSSMHRQFIVSETKYGHPPPPDSFELRPTNSLVVTESVLPISYPDMVYSSLREVVVPGDDLAYYQNQNEENIVNDKQSHEYIDEFCINKPESTTIVTEPIDYISSGIRSCLQVVSNIDKEDKVEHTSPTKAGVVFVNHESDSKLAKADSGNFNRSIGDSETAETDSELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMLHGSLRNVLLKKERVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKRCDSEWKKLMEECWSPDPEARPSFTEVKNRLRNMSAALQKKRPNVRSR 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04667 1206 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 919 1013 - -
Trre1g04667 1206 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1051 1063 IPR008271 GO:0004672|GO:0006468
Trre1g04667 1206 Gene3D - 237 320 - -
Trre1g04667 1206 Pfam PB1 domain 234 318 IPR000270 GO:0005515
Trre1g04667 1206 PANTHER SERINE-THREONINE PROTEIN KINASE 267 1190 - -
Trre1g04667 1206 Gene3D Transferase(Phosphotransferase) domain 1 1014 1205 - -
Trre1g04667 1206 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1014 1205 - -
Trre1g04667 1206 CDD STKc_MAP3K-like 932 1189 - -
Trre1g04667 1206 SMART serkin_6 926 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04667 1206 ProSitePatterns Protein kinases ATP-binding region signature. 932 953 IPR017441 GO:0005524
Trre1g04667 1206 Gene3D Phosphorylase Kinase; domain 1 919 1013 - -
Trre1g04667 1206 SUPERFAMILY Protein kinase-like (PK-like) 915 1189 IPR011009 -
Trre1g04667 1206 CDD PB1_UP2 222 318 - -
Trre1g04667 1206 SUPERFAMILY CAD & PB1 domains 234 327 - -
Trre1g04667 1206 SMART PB1_new 233 320 IPR000270 GO:0005515
Trre1g04667 1206 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 238 320 - -
Trre1g04667 1206 Pfam Protein tyrosine and serine/threonine kinase 928 1189 IPR001245 GO:0004672|GO:0006468
Trre1g04667 1206 PRINTS Tyrosine kinase catalytic domain signature 1008 1021 IPR001245 GO:0004672|GO:0006468
Trre1g04667 1206 PRINTS Tyrosine kinase catalytic domain signature 1045 1063 IPR001245 GO:0004672|GO:0006468
Trre1g04667 1206 PRINTS Tyrosine kinase catalytic domain signature 1116 1138 IPR001245 GO:0004672|GO:0006468
Trre1g04667 1206 PRINTS Tyrosine kinase catalytic domain signature 1160 1182 IPR001245 GO:0004672|GO:0006468
Trre1g04667 1206 ProSiteProfiles Protein kinase domain profile. 926 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04667 Trre-Chr1 52734760 52740534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04667 218 358 MAP Kinase Kinase Kinase AT1G16270 56.643 8.42e-39 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre1g04667 PK_Tyr_Ser-Thr 1.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04667 - - tpra:123914366 2222.97