Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04666 ATGAGTAATGAGGATCCTGGAATTTCAGGCAATAATTATAGAGGTATAGTGAGTGTTGGGTTTAGCGACATAAGCCCTTCTGGTAAAGATGATGAAGATAATGTATGTCATCAGACCGGTGAAGAATTTTCTTCCGAGTTCTTACGCGATCGGGTTGCTTTAAGGAAGTTTCCTGTCATACCTGATGTAGAGCAGCGCCTGCCAAACATATTGAACTTCAATAATAACAATTTTCAATTGGTCTACGAGGATCAACATCATGTCCTTGGTCTTGGGAGAATGGATTCTGATAGCAATTTGGATTTGTCAGAGATTGCTTCGGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCTTATCATAATAATTTGAGCAAATACCAGTGTGAACATGGTGGTACCAGACAAGCATCGAGTACATTTTCCAGACAATCATCAAGTAGGTTTTCTGACGGATGCGATCAAGTTGCCTCGGGACCAAATACTCCGTCTATTTATGCCGGTGAGTCTCCTCGTTCGTGCCATCCTTATGGAACAGTATTCTCAGAAGGTTCCTTCAAGAAAATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGACCAAATGACGGGAAACTCAGATATGTGGGTGGAGAGACGCGGATTATATCGATCAGGAGGAACATCACACATGAAGAACTTACGGGGAAGACTTCTGGTATTTGCAATCAAACTCACATCATCAAATACCAACTTCCTGGAGAGGATCTTGATGCTCTTATATCTGTTTGTTCTGATGAGGATCTTCATCATATGATCGAGGAATACGAAGAGCTTGAAAGAGCTGGAGGATCTCAACGACTTAGGATTTTTCTTATACCTTCAAATGAACTTGAGAGTCCAAGCTCTAATGAATCAAGAGTCAATCAACAAAGTGATGTTGATTACCATTATGTTGTTGCTGTTAATGGTATACTAGATCGAAGTCCGCGAAAGAATCCTGGTGGACTAAGTCTGGCAAGCCATACAAGCCAATTTGCAAATACTTCTGATTACAACAATCTACACTTCCATAGGGAATCATCCACATATGCATTTGCTTCCGAGGTAAAGGATTGCAACCCAACCTCTTCAAATTTGGCAGAGATAATGTCAAAACCAGGTCCATTTTTAGCATCAGTTAAGGTAGGGGGGAAGTCATTTAATCAAACACATCTATCTGCCATTTGTGTGCAGCCTAAAGATCAAACAAATTCTAAAGTTCAGTTATTTACGGATCAATCATATAATGTTGTTAATGAAAACATTATACCCTATGCCATGGAAAATATTCCACGTGACAACTCTTTGTATGTGGATAATACCGGTTATGCTGATCCCATTACATATTATAACAATCTTACCCAAGGGTCTCCATGTGTGAACTATCATCCTAGTAATCAATATACATTGGAGTCTGACCAAGACAGGAAGTCTAATGTTGAATTTAATTTTCACAGACGAACCAATAGTAAAGAATTTGTCTCTCCTGTAATTTGTAATCAAACTGATATGATATTTGAGAGACCTTTAGTTAATAATGAAGGTTCATACCATTTTAACAATATTGTCTCTCATCCTCATGAGTCAGCGAGTGTCTTTTCGGTGTCTGGCGATAGGGATGTATCTCAATACAAAATGTTGCATACTCTTTCCGACTCAACGCTTCTGGAGAATAATGAAAATTTCAAAGGCCACACACAATTTCCGTTTAATGTTGAGCGAGAAAAACTATCATCATTGGACACTTCAAGTTCTTTTGAGGAATGTTCAATACAGCCAGGAGAGATAAATGATGGGAGAGAGCATATGGCTTTACATCAAAACCCACCCAATTTTGGAATGACTGATAGTTGCAAGAGATTGTCAGAAATTGGCAGAGAAAAATTACAACATGCAAATAAAAGTGTTGATTGGCTCGATGAAAAAATTGGACCTACGCCACAAAATTTACAGTACATCTGCTACCAACATGGTGCTTGCTCATCTTCACCGGACTTACAAAGTAGTGAATGCAATGCATCTGCTGCACCATTTATCCCTTCACAATCTACTAGAAGCATCACAGAGCAACCACATGGTATACCATTAGACACAATTGCTTCGGAGTTTTCTATGAGGAGCCAAAACTCATCAATGCATCGCCAATTTATTGTGTCGGAGACAAAATATGGTCATCCACCTCCGCCTGACTCTTTTGAGTTACGACCTACTAACTCCCTAGTCGTCACAGAGTCTGTATTACCAATCTCATATCCAGATATGGTTTATTCTTCACTAAGAGAGGTTGTTGTCCCTGGTGATGATCTTGCATACTACCAGAACCAAAATGAAGAAAATATAGTCAATGACAAACAATCTCATGAATACATTGATGAATTTTGCATCAACAAGCCAGAATCAACAACAATTGTCACAGAGCCAATTGATTATATTTCTTCAGGTATCCGGTCATGCTTACAAGTTGTCTCAAATATAGATAAAGAGGACAAAGTTGAACATACTTCTCCTACAAAGGCAGGGGTAGTGTTTGTTAATCATGAATCTGATAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAGGTCTATTGGTGATTCAGAAACTGCTGAAACAGATTCTGAATTGTATGGTTTGCAGATTATTGAGAATGGCGATCTTGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGGAAATGGAGGGGAACCGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCGCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCAAAGATCCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAGAGGCAAGCAAACTCCCACATATATAAAGTGCTTGATCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATTTGGGCGATCCGGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAATTATTGGATGGCAACAGTTGTAGAGTATCTGAGAAGGTCGATATTTTCTCATTTGGTATAGCAATGTGGGAAATCTTGACCGGGGAAGAACCGTATGCTAATATGCACTGTGGTGCCATCATAGGAGGTATTGTCAGTAACACGCTCAGGCCATCTATTCCGAAACGATGCGATTCCGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGCCCTGATCCAGAAGCCAGACCATCATTCACAGAAGTTAAAAATAGACTCCGCAACATGTCAGCGGCACTGCAAAAAAAGAGACCTAACGTTAGGAGTCGATGA 3555 0.3989 MSNEDPGISGNNYRGIVSVGFSDISPSGKDDEDNVCHQTGEEFSSEFLRDRVALRKFPVIPDVEQRLPNILNFNNNNFQLVYEDQHHVLGLGRMDSDSNLDLSEIASARGYVAEADNRAYHNNLSKYQCEHGGTRQASSTFSRQSSSRFSDGCDQVASGPNTPSIYAGESPRSCHPYGTVFSEGSFKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRRNITHEELTGKTSGICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNELESPSSNESRVNQQSDVDYHYVVAVNGILDRSPRKNPGGLSLASHTSQFANTSDYNNLHFHRESSTYAFASEVKDCNPTSSNLAEIMSKPGPFLASVKVGGKSFNQTHLSAICVQPKDQTNSKVQLFTDQSYNVVNENIIPYAMENIPRDNSLYVDNTGYADPITYYNNLTQGSPCVNYHPSNQYTLESDQDRKSNVEFNFHRRTNSKEFVSPVICNQTDMIFERPLVNNEGSYHFNNIVSHPHESASVFSVSGDRDVSQYKMLHTLSDSTLLENNENFKGHTQFPFNVEREKLSSLDTSSSFEECSIQPGEINDGREHMALHQNPPNFGMTDSCKRLSEIGREKLQHANKSVDWLDEKIGPTPQNLQYICYQHGACSSSPDLQSSECNASAAPFIPSQSTRSITEQPHGIPLDTIASEFSMRSQNSSMHRQFIVSETKYGHPPPPDSFELRPTNSLVVTESVLPISYPDMVYSSLREVVVPGDDLAYYQNQNEENIVNDKQSHEYIDEFCINKPESTTIVTEPIDYISSGIRSCLQVVSNIDKEDKVEHTSPTKAGVVFVNHESDSKLAKADSGNFNRSIGDSETAETDSELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMLHGSLRNVLLKKERQANSHIYKVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKRCDSEWKKLMEECWSPDPEARPSFTEVKNRLRNMSAALQKKRPNVRSR 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04666 1184 ProSiteProfiles Protein kinase domain profile. 896 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04666 1184 Gene3D Phosphorylase Kinase; domain 1 889 984 - -
Trre1g04666 1184 Pfam PB1 domain 204 288 IPR000270 GO:0005515
Trre1g04666 1184 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1029 1041 IPR008271 GO:0004672|GO:0006468
Trre1g04666 1184 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 208 290 - -
Trre1g04666 1184 Gene3D Transferase(Phosphotransferase) domain 1 999 1183 - -
Trre1g04666 1184 SMART PB1_new 203 290 IPR000270 GO:0005515
Trre1g04666 1184 MobiDBLite consensus disorder prediction 135 168 - -
Trre1g04666 1184 PRINTS Tyrosine kinase catalytic domain signature 1023 1041 IPR001245 GO:0004672|GO:0006468
Trre1g04666 1184 PRINTS Tyrosine kinase catalytic domain signature 1094 1116 IPR001245 GO:0004672|GO:0006468
Trre1g04666 1184 PRINTS Tyrosine kinase catalytic domain signature 1138 1160 IPR001245 GO:0004672|GO:0006468
Trre1g04666 1184 PRINTS Tyrosine kinase catalytic domain signature 978 991 IPR001245 GO:0004672|GO:0006468
Trre1g04666 1184 SMART serkin_6 896 1173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04666 1184 PANTHER SERINE-THREONINE PROTEIN KINASE 240 1168 - -
Trre1g04666 1184 CDD PB1_UP2 192 288 - -
Trre1g04666 1184 CDD STKc_MAP3K-like 902 1167 - -
Trre1g04666 1184 Pfam Protein tyrosine and serine/threonine kinase 898 1167 IPR001245 GO:0004672|GO:0006468
Trre1g04666 1184 SUPERFAMILY Protein kinase-like (PK-like) 885 1167 IPR011009 -
Trre1g04666 1184 MobiDBLite consensus disorder prediction 135 169 - -
Trre1g04666 1184 ProSitePatterns Protein kinases ATP-binding region signature. 902 923 IPR017441 GO:0005524
Trre1g04666 1184 SUPERFAMILY CAD & PB1 domains 204 297 - -
Trre1g04666 1184 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 889 983 - -
Trre1g04666 1184 Gene3D - 207 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04666 Trre-Chr1 52734760 52740534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04666 38 328 MAP Kinase Kinase Kinase AT1G16270 39.456 2.69e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre1g04666 PK_Tyr_Ser-Thr 1.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04666 - - tpra:123914366 2147.09