Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04665 ATGAGTAATGAGGATCCTGGAATTTCAGGCAATAATTATAGAGGTATAGTGAGTGTTGGGTTTAGCGACATAAGCCCTTCTGGTAAAGATGATGAAGATAATGTATGTCATCAGACCGGTGAAGAATTTTCTTCCGAGTTCTTACGCGATCGGGTTGCTTTAAGGAAGTTTCCTGTCATACCTGATGTAGAGCAGCGCCTGCCAAACATATTGAACTTCAATAATAACAATTTTCAATTGGTCTACGAGGATCAACATCATGTCCTTGGTCTTGGGAGAATGGATTCTGATAGCAATTTGGATTTGTCAGAGATTGCTTCGGCTAGAGGCTATGTTGCTGAAGCTGACAACAGGGCTTATCATAATAATTTGAGCAAATACCAGTGTGAACATGGTGGTACCAGACAAGCATCGAGTACATTTTCCAGACAATCATCAAGTAGGTTTTCTGACGGATGCGATCAAGTTGCCTCGGGACCAAATACTCCGTCTATTTATGCCGGTGAGTCTCCTCGTTCGTGCCATCCTTATGGAACAGTATTCTCAGAAGGTTCCTTCAAGAAAATAAAGTTTCTATGTAGTTTTGGAGGTCGAATACTGCCAAGACCAAATGACGGGAAACTCAGATATGTGGGTGGAGAGACGCGGATTATATCGATCAGGAGGAACATCACACATGAAGAACTTACGGGGAAGACTTCTGGTATTTGCAATCAAACTCACATCATCAAATACCAACTTCCTGGAGAGGATCTTGATGCTCTTATATCTGTTTGTTCTGATGAGGATCTTCATCATATGATCGAGGAATACGAAGAGCTTGAAAGAGCTGGAGGATCTCAACGACTTAGGATTTTTCTTATACCTTCAAATGAACTTGAGAGTCCAAGCTCTAATGAATCAAGAGTCAATCAACAAAGTGATGTTGATTACCATTATGTTGTTGCTGTTAATGGTATACTAGATCGAAGTCCGCGAAAGAATCCTGGTGGACTAAGTCTGGCAAGCCATACAAGCCAATTTGCAAATACTTCTGATTACAACAATCTACACTTCCATAGGGAATCATCCACATATGCATTTGCTTCCGAGGTAAAGGATTGCAACCCAACCTCTTCAAATTTGGCAGAGATAATGTCAAAACCAGGTCCATTTTTAGCATCAGTTAAGGTAGGGGGGAAGTCATTTAATCAAACACATCTATCTGCCATTTGTGTGCAGCCTAAAGATCAAACAAATTCTAAAGTTCAGTTATTTACGGATCAATCATATAATGTTGTTAATGAAAACATTATACCCTATGCCATGGAAAATATTCCACGTGACAACTCTTTGTATGTGGATAATACCGGTTATGCTGATCCCATTACATATTATAACAATCTTACCCAAGGGTCTCCATGTGTGAACTATCATCCTAGTAATCAATATACATTGGAGTCTGACCAAGACAGGAAGTCTAATGTTGAATTTAATTTTCACAGACGAACCAATAGTAAAGAATTTGTCTCTCCTGTAATTTGTAATCAAACTGATATGATATTTGAGAGACCTTTAGTTAATAATGAAGGTTCATACCATTTTAACAATATTGTCTCTCATCCTCATGAGTCAGCGAGTGTCTTTTCGGTGTCTGGCGATAGGGATGTATCTCAATACAAAATGTTGCATACTCTTTCCGACTCAACGCTTCTGGAGAATAATGAAAATTTCAAAGGCCACACACAATTTCCGTTTAATGTTGAGCGAGAAAAACTATCATCATTGGACACTTCAAGTTCTTTTGAGGAATGTTCAATACAGCCAGGAGAGATAAATGATGGGAGAGAGCATATGGCTTTACATCAAAACCCACCCAATTTTGGAATGACTGATAGTTGCAAGAGATTGTCAGAAATTGGCAGAGAAAAATTACAACATGCAAATAAAAGTGTTGATTGGCTCGATGAAAAAATTGGACCTACGCCACAAAATTTACAGTACATCTGCTACCAACATGGTGCTTGCTCATCTTCACCGGACTTACAAAGTAGTGAATGCAATGCATCTGCTGCACCATTTATCCCTTCACAATCTACTAGAAGCATCACAGAGCAACCACATGGTATACCATTAGACACAATTGCTTCGGAGTTTTCTATGAGGAGCCAAAACTCATCAATGCATCGCCAATTTATTGTGTCGGAGACAAAATATGGTCATCCACCTCCGCCTGACTCTTTTGAGTTACGACCTACTAACTCCCTAGTCGTCACAGAGTCTGTATTACCAATCTCATATCCAGATATGGTTTATTCTTCACTAAGAGAGGTTGTTGTCCCTGGTGATGATCTTGCATACTACCAGAACCAAAATGAAGAAAATATAGTCAATGACAAACAATCTCATGAATACATTGATGAATTTTGCATCAACAAGCCAGAATCAACAACAATTGTCACAGAGCCAATTGATTATATTTCTTCAGGTATCCGGTCATGCTTACAAGTTGTCTCAAATATAGATAAAGAGGACAAAGTTGAACATACTTCTCCTACAAAGGCAGGGGTAGTGTTTGTTAATCATGAATCTGATAGTAAGCTTGCAAAAGCTGATAGTGGAAACTTCAATAGGTCTATTGGTGATTCAGAAACTGCTGAAACAGATTCTGAATTGTATGGTTTGCAGATTATTGAGAATGGCGATCTTGAAGAACTACATGAGTTAGGATCTGGAACCTTTGGAACCGTTTATCATGGGAAATGGAGGGGAACCGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCGCTGGTAGATTGTCAGAGCAAGAGCGGTTGACTAAAGATTTTTGGAGAGAGGCAAAGATCCTGTCAACTCTTCACCATCCAAATGTGGTGGCATTTTACGGGGTAGTTCCAGATGGCCCAGGTGGAACATTGGCAACTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAGGAGAGAGTGCTTGATCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGAATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATTTGGGCGATCCGGAACGGCCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATTAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGGACTCTTCCATGGATGGCACCAGAATTATTGGATGGCAACAGTTGTAGAGTATCTGAGAAGGTCGATATTTTCTCATTTGGTATAGCAATGTGGGAAATCTTGACCGGGGAAGAACCGTATGCTAATATGCACTGTGGTGCCATCATAGGAGGTATTGTCAGTAACACGCTCAGGCCATCTATTCCGAAACGATGCGATTCCGAGTGGAAAAAATTGATGGAAGAGTGTTGGAGCCCTGATCCAGAAGCCAGACCATCATTCACAGAAGTTAAAAATAGACTCCGCAACATGTCAGCGGCACTGCAAAAAAAGAGACCTAACGTTAGGAGTCGATGA 3531 0.399 MSNEDPGISGNNYRGIVSVGFSDISPSGKDDEDNVCHQTGEEFSSEFLRDRVALRKFPVIPDVEQRLPNILNFNNNNFQLVYEDQHHVLGLGRMDSDSNLDLSEIASARGYVAEADNRAYHNNLSKYQCEHGGTRQASSTFSRQSSSRFSDGCDQVASGPNTPSIYAGESPRSCHPYGTVFSEGSFKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRRNITHEELTGKTSGICNQTHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNELESPSSNESRVNQQSDVDYHYVVAVNGILDRSPRKNPGGLSLASHTSQFANTSDYNNLHFHRESSTYAFASEVKDCNPTSSNLAEIMSKPGPFLASVKVGGKSFNQTHLSAICVQPKDQTNSKVQLFTDQSYNVVNENIIPYAMENIPRDNSLYVDNTGYADPITYYNNLTQGSPCVNYHPSNQYTLESDQDRKSNVEFNFHRRTNSKEFVSPVICNQTDMIFERPLVNNEGSYHFNNIVSHPHESASVFSVSGDRDVSQYKMLHTLSDSTLLENNENFKGHTQFPFNVEREKLSSLDTSSSFEECSIQPGEINDGREHMALHQNPPNFGMTDSCKRLSEIGREKLQHANKSVDWLDEKIGPTPQNLQYICYQHGACSSSPDLQSSECNASAAPFIPSQSTRSITEQPHGIPLDTIASEFSMRSQNSSMHRQFIVSETKYGHPPPPDSFELRPTNSLVVTESVLPISYPDMVYSSLREVVVPGDDLAYYQNQNEENIVNDKQSHEYIDEFCINKPESTTIVTEPIDYISSGIRSCLQVVSNIDKEDKVEHTSPTKAGVVFVNHESDSKLAKADSGNFNRSIGDSETAETDSELYGLQIIENGDLEELHELGSGTFGTVYHGKWRGTDVAIKRIKSSCFAGRLSEQERLTKDFWREAKILSTLHHPNVVAFYGVVPDGPGGTLATVTEYMLHGSLRNVLLKKERVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNSCRVSEKVDIFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPSIPKRCDSEWKKLMEECWSPDPEARPSFTEVKNRLRNMSAALQKKRPNVRSR 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04665 1176 Pfam PB1 domain 204 288 IPR000270 GO:0005515
Trre1g04665 1176 Pfam Protein tyrosine and serine/threonine kinase 898 1159 IPR001245 GO:0004672|GO:0006468
Trre1g04665 1176 PRINTS Tyrosine kinase catalytic domain signature 978 991 IPR001245 GO:0004672|GO:0006468
Trre1g04665 1176 PRINTS Tyrosine kinase catalytic domain signature 1086 1108 IPR001245 GO:0004672|GO:0006468
Trre1g04665 1176 PRINTS Tyrosine kinase catalytic domain signature 1130 1152 IPR001245 GO:0004672|GO:0006468
Trre1g04665 1176 PRINTS Tyrosine kinase catalytic domain signature 1015 1033 IPR001245 GO:0004672|GO:0006468
Trre1g04665 1176 SUPERFAMILY Protein kinase-like (PK-like) 885 1159 IPR011009 -
Trre1g04665 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 208 290 - -
Trre1g04665 1176 Gene3D Transferase(Phosphotransferase) domain 1 984 1175 - -
Trre1g04665 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 889 983 - -
Trre1g04665 1176 ProSiteProfiles Protein kinase domain profile. 896 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04665 1176 SMART PB1_new 203 290 IPR000270 GO:0005515
Trre1g04665 1176 MobiDBLite consensus disorder prediction 135 168 - -
Trre1g04665 1176 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 984 1175 - -
Trre1g04665 1176 CDD STKc_MAP3K-like 902 1159 - -
Trre1g04665 1176 SMART serkin_6 896 1165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04665 1176 Gene3D - 207 290 - -
Trre1g04665 1176 CDD PB1_UP2 192 288 - -
Trre1g04665 1176 Gene3D Phosphorylase Kinase; domain 1 889 983 - -
Trre1g04665 1176 MobiDBLite consensus disorder prediction 135 169 - -
Trre1g04665 1176 ProSitePatterns Protein kinases ATP-binding region signature. 902 923 IPR017441 GO:0005524
Trre1g04665 1176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1021 1033 IPR008271 GO:0004672|GO:0006468
Trre1g04665 1176 SUPERFAMILY CAD & PB1 domains 204 297 - -
Trre1g04665 1176 PANTHER SERINE-THREONINE PROTEIN KINASE 240 1160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04665 Trre-Chr1 52734760 52740534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04665 38 328 MAP Kinase Kinase Kinase AT1G16270 39.456 2.49e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre1g04665 PK_Tyr_Ser-Thr 1.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04665 - - tpra:123914366 2154.41