Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04663 ATGGCACTTCCCATTACAAAAGATTTGTTTCCTCAACAATTTTCAACCAATATTAGGGTTCTTGTGATTGATCATGATATCAATCTTCTCAATGCTATTGAGAAATTATGCTATCAATCCGGTTACTCAGTCAAGACATGTTCCAAAGTTTCGGATGCTTTGAATCTTTTGAGGGAAAAAAAGGACACTTTTGATATGGTACTAATTGAAGCCAAAATGCCTGATATGGATTCCTATGATTTTTTGCAACATGTTACACAACAAATCAATATCCCAGTTATTATGATGTGTGTTGATGACACAAAAAGTGATGTGATGAAAGCTATTCATGATGGAGCTTGTGATTATTGGATCAAGCCTTTCAAAGAGAACCTAATTCAGAACATGTGGCAACATGTTGCAAGGAAAATGTGGATTGAAAATAAATACCTAGAATTTACTGAAAAATTGGAGGTTGAAGGGGAGAGATATGATTCAAAGTTACCGTTCATTGATCAAAAAATAGAAGTGATCAACTCTAATGCGGAACAAGGGAGTGTTGAAAAGAATAATGACAAACTTGAATTGTCAACGAAAAAGACACGTTTTAAATGGTCATCAGAGTTGGATAAAAAGTTTGTTAGTGTCGTGATGGAACTCAATGCCGATAAGGCGGTACCCAAAAAAATTCTTGCAAGGATGAATGTGCCTGGATTGACTAGAGAACATGTAGCTAGTAAACTTCAGAAATATAGGGATCGTTTGAAGAGAGGAGAGACAAAGAAACAAAAAAAATGGAACAGAACTTCAGAAGCTACTACAGAATCCAAAAGTTCAAATAAATCTTTAGAATTTGATTTTCAAGCTTATGATGCTTCTACTCCTCATGTTGTTCCCAACAATTTCACTCCTCATGATTCTAAGAATATAATTAATGAAGCTCCATTTAATTTTTATCAAAATGATTATGAGGGAGAAATTACTTCAGCTTTTATCAACCAACATTGCAATGGATTTGGGACTAATTCTATGTTCTTACCTAATGGCATCATCCCTCACCAAAATCCAATGACTCAGCCTCTTCCAATGTTCTTGGAAAATTGGATATCTTCATGA 1095 0.3452 MALPITKDLFPQQFSTNIRVLVIDHDINLLNAIEKLCYQSGYSVKTCSKVSDALNLLREKKDTFDMVLIEAKMPDMDSYDFLQHVTQQINIPVIMMCVDDTKSDVMKAIHDGACDYWIKPFKENLIQNMWQHVARKMWIENKYLEFTEKLEVEGERYDSKLPFIDQKIEVINSNAEQGSVEKNNDKLELSTKKTRFKWSSELDKKFVSVVMELNADKAVPKKILARMNVPGLTREHVASKLQKYRDRLKRGETKKQKKWNRTSEATTESKSSNKSLEFDFQAYDASTPHVVPNNFTPHDSKNIINEAPFNFYQNDYEGEITSAFINQHCNGFGTNSMFLPNGIIPHQNPMTQPLPMFLENWISS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04663 364 Gene3D - 190 250 - -
Trre1g04663 364 CDD REC_typeB_ARR-like 20 134 - -
Trre1g04663 364 SMART REC_2 18 130 IPR001789 GO:0000160
Trre1g04663 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 249 IPR017930 -
Trre1g04663 364 FunFam Two-component response regulator 189 252 - -
Trre1g04663 364 Gene3D - 11 142 - -
Trre1g04663 364 MobiDBLite consensus disorder prediction 245 271 - -
Trre1g04663 364 SUPERFAMILY Homeodomain-like 191 250 IPR009057 -
Trre1g04663 364 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Trre1g04663 364 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 268 IPR045279 GO:0009736
Trre1g04663 364 Pfam Myb-like DNA-binding domain 197 245 IPR001005 -
Trre1g04663 364 SUPERFAMILY CheY-like 17 151 IPR011006 -
Trre1g04663 364 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Trre1g04663 364 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 247 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04663 Trre-Chr1 52725507 52727147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04663 53 282 Response Regulator Gene Family AT3G16857 39.615 9.91e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre1g04663 Response_reg 1.3e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04663 - - tpra:123915068 449.129