Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04642 ATGATTATCAACATCTTCTTCATCCTGTTAATAACTTTCCCTCTTCTTTCTCTCTCCGCCACATGTCCTCTCAACTTCACAATCCTAACCACCCTCAACACCGCCGCCGCCACAACACCACCCTCTTCCTTCACTTCAACACCATGTCAATTCGTTCACCAAGCACTCCGACTAGTTCAATCCGACTATCTCCGCCGCACCGACTCTTTCCTCCCTCCTTTAAACTCCTCCGTTCCATGCTGGGACTCTTTCCAATCTTACATCAACAAATTCGCACCCAATTTCAACATTCGTACCTCTTGTGGTTTTCAAACTAATTGGATCTCACAAGGTTGTGTCAACGTTACAACAAGAAAACAATTTGAATCAATAGTTCCAAAATCAACTATTCAAATTATGCAAAACAATTGTAATCAATCACTTCAAGATAATTCTCCTTGTGCTCTTTGTACAACTAGTTTATCTGGTTTACCTAATCTTGGTCAATCCATTGGTAATCTTTCTGATTGTACTGGTTATCCTTCAATCTATGCTGCTGCTTTTTCAAATCAATTTGGACCCTCTGATCCTGGTACTGCTAAGTGTTTATTTGCACTTGATTTCAATTCTGGTGGTTCTTCTGGCAGTAAGAAAAAAGTTATTATTATTGTTGTTTCTGTTGTTTCTGTTTTGATTTTGTTGTTGATAGTTATTGGTGTTTGGGTTTATTGGAAATTTAATGATAAGTCAATTGGGGATGATGGTAAGGATTATGGTGCTAATATCGGTGAGGCGGGTTCGGTTTCTGGGTTGGATTTGGACCAAAGTACTACTTTGATTAGGTTTACTATCGACGATATTAAGAAGGCCACGAGGAATTTTCATAGAGATAATATAATTGGGAAAGGTGGTTATGGGAATGTGTATAAAGGGTTGTTGAATGATGGAAGTGAAGTTGCTTTTAAGAGGTTTAAGAATTGTTCTGCTGCTGGTGATTCTAGTTTTACTCATGAGGTTCAAGTTATTGCTAGTATTAGGCATGTCAATCTTGTTGCTTTGAGAGGCTATTGTAGTGCAACCACGCGTTTAGAGGGTTATCAGAGGATTATTGTTTGTGATTTGATGAAAAATGGGAGTCTTCATGATCATTTGTTTGGTTCTGGAGGGGTGAAACTTAGTTGGCCGGCTCGTCAGAAGATTGCTCTTGGAACTGCTAGGGGATTGGCTTATTTGCATTATGGAGCTCAACCTGCTATCATTCATAGGGATATTAAAGCAAATAATATACTTTTGGATGATAAGTTCGAAGCTAAGGTTGCTGATTTTGGACTTGCTAAGTTTAATCCCGAGGGAATGACTCATATGAGTACAAGGGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAAAGGAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTATTGAGTGGAAGAAAAGCTCTTGAAACGAACGATGATGGACAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTGGTTAGAACGGGAAATGCATTGGATGTTATTGAAGACGGAATGCCGGAACAAGGTTCAAATCAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGATGGAGACCGAAGATGAAGTGGTGCCCACGATACCCGGAAGGCCGATTCCTCTTGTCGCTGGGAGACTTGATATTGAGAGATCTGCTAGCAGTTTTGGCGGCTCTGGTCAGCTCTCTAGTCCAACAGGAGAGTATGATCAAGTTTTGCTGATTCGAGTATCCCTTTCAGAATCTACTTCTGCAACAAGTCATGTTTTCACTTCAAGCAATTGTGTATATGATTTTAGCCAAGTTCATATTCTAGTGTTTGCTATTGTTGAGGTTGAAGTAACAGATAAGACTTCTTTGGCAGACAACATTTCAAGCAGGCTGACACTAAATGGTCAGAAAGGATTTCAACATCTTATCCAATGTATTTGGTTGTACTTTTCTAATGGATCTGGATTCCATCTTTTTTTAGGACAGTCCTACCTACACCCCAGTTACTTGGCATGA 2115 0.4 MIINIFFILLITFPLLSLSATCPLNFTILTTLNTAAATTPPSSFTSTPCQFVHQALRLVQSDYLRRTDSFLPPLNSSVPCWDSFQSYINKFAPNFNIRTSCGFQTNWISQGCVNVTTRKQFESIVPKSTIQIMQNNCNQSLQDNSPCALCTTSLSGLPNLGQSIGNLSDCTGYPSIYAAAFSNQFGPSDPGTAKCLFALDFNSGGSSGSKKKVIIIVVSVVSVLILLLIVIGVWVYWKFNDKSIGDDGKDYGANIGEAGSVSGLDLDQSTTLIRFTIDDIKKATRNFHRDNIIGKGGYGNVYKGLLNDGSEVAFKRFKNCSAAGDSSFTHEVQVIASIRHVNLVALRGYCSATTRLEGYQRIIVCDLMKNGSLHDHLFGSGGVKLSWPARQKIALGTARGLAYLHYGAQPAIIHRDIKANNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALETNDDGQPSALTDWAWSLVRTGNALDVIEDGMPEQGSNQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETEDEVVPTIPGRPIPLVAGRLDIERSASSFGGSGQLSSPTGEYDQVLLIRVSLSESTSATSHVFTSSNCVYDFSQVHILVFAIVEVEVTDKTSLADNISSRLTLNGQKGFQHLIQCIWLYFSNGSGFHLFLGQSYLHPSYLA 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04642 704 Pfam Protein kinase domain 287 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04642 704 CDD STKc_IRAK 293 562 - -
Trre1g04642 704 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 368 569 - -
Trre1g04642 704 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 64 586 - -
Trre1g04642 704 Pfam SPARK 19 157 IPR043891 -
Trre1g04642 704 Gene3D Transferase(Phosphotransferase) domain 1 368 569 - -
Trre1g04642 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Trre1g04642 704 SMART serkin_6 287 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04642 704 ProSiteProfiles Protein kinase domain profile. 287 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04642 704 SUPERFAMILY Protein kinase-like (PK-like) 270 571 IPR011009 -
Trre1g04642 704 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Trre1g04642 704 Gene3D Phosphorylase Kinase; domain 1 260 366 - -
Trre1g04642 704 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 254 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04642 Trre-Chr1 52539235 52542604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04642 3 603 Receptor kinase-like Gene Family AT2G48010 62.252 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre1g04642 Pkinase 7.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04642 - - gmx:100800760 868.611