Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04641 ATGAAGGAAAAGGTTGATTCACCTATTACAGTTCTTGAAGACTATTTTAGAAGTTCAGATTCAGAATCAAGTTCTTCCAAAGAACCTACTTTAGATTCTGAGTCTCATGATGATAATTCAAAACCTTTTTCAAGGTGGCATTCATTTTTTCAATTGTTGAAAACCAGATCAAAGAAACAGTTACCTACATTGAATCATTCTCTTAATGGACAACTCTCAAGAAGAATGAGTAGAAGCATGAGAGATAACATTCTTCCAAGTTGTCTCACTCTCTCAAATGCAACTTCAACACCTTGTAGATCACCATGGAAAATCTTTTCTCATCATGATATACAAATTGCTACCAATTATTTTAGCCAAGAAAATTTGATTGGAAAAGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGGCGAATCATCGGTTAGTAGCAATCAAACGGTTAACAAGAGGAACTGCTGATGAAATCATAGCAGATTTTTTATCAGAACTTGGTGTAATGGCACATGTTAATCATCCTAATACTGCTAAGCTTGTTGGTTATGGAGTGGATGGAGGAATGTATCTAGTTCTTGAATTGTCCGAAAAAGGGAGTCTAGCTTCAGTGCTATATGGTTCCAAGGAGAAAGTACCATGGTGTATTAGGTACAAAATTGCATTAGGAACAGCAAAGGGTATATTATATCTTCATGAGGGTTGTCAAAAAAGATTTATCCACAGAGATATAAAAGCTGCCAATATCTTGCTCACAGAGGACTTTGAGCCTCAGATTTGTGATTTCGGACTAGCAAAATGGCTGCCAGAGAATTGGACTCATCACAATGTTTCAAAATTTGAAGGAACTTTTGGCTACCTTGCTCCTGAATACTTGCTTCATGGCATAGTAGATGAGAAAACAGATGTATTTGCCTTTGGTGTATTGCTATTAGAATTAGTCAGTGGAAGAAGAGCACTTGATTATTCACAACAAAGCCTTGTTTTATGGGCAAAACCTTTGTTGAAAAAGAATGATATTATGGAGCTGATAGATCCGTCACTAGACAGGGAATTCGACGTTAGGCAGATGAATCTTATGCTCTTGACAGCTTCTTTATGCATACAACAGTCCTCCATTCGTCGCCCCTCTATGAGACAGGTTGTGCAGCTTCTGAATGGAAACCTTAGTTTCTTTAAGGCCATGAAGAAAACTCGATTGCCATTCTTCCGAAGAGTCTTTCGCGAAGAGCTCCTTGATGATTCTGATTAG 1245 0.3759 MKEKVDSPITVLEDYFRSSDSESSSSKEPTLDSESHDDNSKPFSRWHSFFQLLKTRSKKQLPTLNHSLNGQLSRRMSRSMRDNILPSCLTLSNATSTPCRSPWKIFSHHDIQIATNYFSQENLIGKGGYAEVYKGCLANHRLVAIKRLTRGTADEIIADFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKVPWCIRYKIALGTAKGILYLHEGCQKRFIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHNVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLDREFDVRQMNLMLLTASLCIQQSSIRRPSMRQVVQLLNGNLSFFKAMKKTRLPFFRRVFREELLDDSD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04641 414 ProSiteProfiles Protein kinase domain profile. 118 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04641 414 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 89 192 - -
Trre1g04641 414 Gene3D Transferase(Phosphotransferase) domain 1 195 397 - -
Trre1g04641 414 SUPERFAMILY Protein kinase-like (PK-like) 95 383 IPR011009 -
Trre1g04641 414 PANTHER OS08G0249100 PROTEIN 6 410 IPR046958 -
Trre1g04641 414 SMART serkin_6 118 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04641 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Trre1g04641 414 ProSitePatterns Protein kinases ATP-binding region signature. 124 146 IPR017441 GO:0005524
Trre1g04641 414 Gene3D Phosphorylase Kinase; domain 1 92 192 - -
Trre1g04641 414 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 195 397 - -
Trre1g04641 414 Pfam Protein kinase domain 119 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04641 414 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04641 Trre-Chr1 52497046 52499503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04641 106 385 Receptor kinase-like Gene Family AT1G53420 41.319 1.17e-66 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre1g04641 Pkinase 7.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04641 - - gmx:100780587 686.797