Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04622 ATGTTTAGCATGTTCAGTGCAGGTGACTTTGAGGAAGCAGTTGAAGAAGATGCTAAAACTGCTGTACAAGATGGAACTGTCCACCCTCTAACCAACTATGTCATGAATTACGTTAAATTTCTCTATGATTATGACGCAACTCTTAAACAACTTTTTCAAGAGTTTGATCCTGGTGACCCAGAATCTCAATCTGTGAGAAGGTCAGAGGCAAAGGATATTGGTGGCGGATGA 231 0.4069 MFSMFSAGDFEEAVEEDAKTAVQDGTVHPLTNYVMNYVKFLYDYDATLKQLFQEFDPGDPESQSVRRSEAKDIGGG 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04622 76 SUPERFAMILY Cullin repeat-like 8 62 IPR016159 -
Trre1g04622 76 Gene3D Exocyst complex component Exo70 3 73 - -
Trre1g04622 76 MobiDBLite consensus disorder prediction 60 76 - -
Trre1g04622 76 MobiDBLite consensus disorder prediction 55 76 - -
Trre1g04622 76 Pfam Exo70 exocyst complex subunit 9 64 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre1g04622 76 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 59 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04622 Trre-Chr1 52278981 52279503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04622 8 63 EXO70 exocyst subunit family AT5G52340 73.684 4.32e-23 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04622 K07195 - zju:107432252 97.8265