Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04616 ATGTCTTTTAGGAGTATAATTATGGATAGGAAGGGATTTGAGGTTAAATTTGGGTATGGTTTGAGATCAAGGTCACAGTCACACTGTGATGTTGGTGTTACCGATGGTTGTTTGGTGGTTGATGGCATGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTTATGAGAATTGAAGTCTCAGATGATACTTGGCCTGCCCGAAAAAATGTTGTTGCTTGCGCCGGTGTTTGCAGGAGTTGGAGAGAAATTGTGAAGGAAATTGTCAAACCTCCTCAACAATCCAGCAAGTTGACATTCCCTATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTCATTCAGTGCTATATTAAACGAAATCGCAGTAACCAAACATATTATCTTTTTCTCAGTTTGAACCAAGCCTCAACTGATGACGGCAAGTTCCTTCTTGCTGCACGCAAGTGCCGACGTGCAACCCACACTGACTATATCATTTCTCTAAATTGCGATGATGTATCAAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTTTGGGCACCAAATTTACCGTGTATGATGCACACCCTCCAATCTATGGAGCCAACGTTGTAAAGTCTCGTTCCACCAGGCTGGTTAGTCTCAAACAAGTGTCTCCAAGAGTTCCTGCAGGCAACTATCCCATTGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCAAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCATCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCGATTTCTTCATAGCAGAATTGATACTTCTCCATCTATCCCATTCTTCAGATCAAAATCAACCCGCTCAGAGAATATCCAATCAGTAGTACCTTTGACTGGTCAAAACGACGGAATGCTGGTGTTGAAAAACAAGGCTCCTAGGTGGCATGAACAACTCCAATGCTGGTGTTTGAACTTCAACGGACGTGTGACAGTTGCTTCAGTTAAGAATTTCCAGCTGGTCGCATCTCCCAAAAATGGCGTTTCTGAACAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACTATGGATTACCAGTATCCCATCTCCACCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1206 0.4403 MSFRSIIMDRKGFEVKFGYGLRSRSQSHCDVGVTDGCLVVDGMKQSCWANMPPELLRDVLMRIEVSDDTWPARKNVVACAGVCRSWREIVKEIVKPPQQSSKLTFPISLKQPGPRDSLIQCYIKRNRSNQTYYLFLSLNQASTDDGKFLLAARKCRRATHTDYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGANVVKSRSTRLVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASSVEPGGVAPTQTRFLHSRIDTSPSIPFFRSKSTRSENIQSVVPLTGQNDGMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFTMDYQYPISTFEAFAICLSSFDTKIACE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04616 401 CDD F-box_AtTLP-like 48 92 - -
Trre1g04616 401 PANTHER TUBBY-RELATED 43 399 - -
Trre1g04616 401 Gene3D Tubby Protein; Chain A 105 401 IPR025659 -
Trre1g04616 401 SUPERFAMILY F-box domain 43 92 IPR036047 GO:0005515
Trre1g04616 401 FunFam Tubby-like F-box protein 105 401 - -
Trre1g04616 401 Pfam Tub family 109 396 IPR000007 -
Trre1g04616 401 SUPERFAMILY Tubby C-terminal domain-like 97 401 IPR025659 -
Trre1g04616 401 PRINTS Tubby superfamily signature 358 377 IPR000007 -
Trre1g04616 401 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Trre1g04616 401 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Trre1g04616 401 PRINTS Tubby superfamily signature 379 401 IPR000007 -
Trre1g04616 401 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Trre1g04616 401 PRINTS Tubby superfamily signature 331 347 IPR000007 -
Trre1g04616 401 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Trre1g04616 401 ProSitePatterns Tub family signature 2. 386 401 IPR018066 -
Trre1g04616 401 Pfam F-box domain 48 94 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04616 Trre-Chr1 52243812 52246301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04616 1 401 TUB Transcription Factor Family AT2G47900 74.272 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre1g04616 Tub 2.3e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04616 K19600 - gmx:100809257 729.939