Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04613 ATGCGCTTCACTGATCATAGCCACCAGAAAAATGATCCACCTTTGTTTACTCTTGGCTTGCTCGGGCAGGCTGATCAGTGTAGCCACAAAAATGGCTCGCTCTTGGTTGATCCAGGTTTGGATATCTCCTCTCTTCCCAAGCATGTCAATGAATGCTACAATAAAGATGGTTTGTCTTTTGTTTGTCCTGATCCTCCCTCCAAGCATGTTGATCAGTGTTCCCAGAAAAACATCTCAGTCTTGCATGGTCCATGTTTGGTTGGTTCCTCTCTGTCCAAGCATCCTGGTGAATGTAATCAGAAAAATGGCTCGGCCTTGCATGATCCATGTTTGGTTGATTCCTCTATGTTCAAGCATCCTGGTGAATGTAATCAGAAAAATGGTTCGTCTTTGGTTTGTCCTCATCCTGTGGATGAGGTGCTTGCTTTGATTCAAACATATCAAATTGAGTTTGATATGGAAAACTCAATGGGGAGGCTTCCGGGATGTTTTGTTCGAGAGTTTGCATGTTCTCCTACTTCCACTCTACCTAAGTCCTTTGTTCATTCTTATGCGAAGGAACTGTCTCCATACGATCTACATTCTGGTTCTTTGTTCTTGCCTTGGAATGGTTTTGGTGAATCCAATTTTTCTCACTTATTTTCCGATCTGATCTTGGTGGACAGTGCTGGATCTCAATATACATGTGCTTTGAAGATTGTTTTGGACTCTAGCGGAGATATGGCTTATAATCTTTCTGGTGGTTGGACTGATTTTTGCACAACTCACAATGTTGTTGAAGGGGATAGTGTGGAGTTTAGTGTTGCTCCCTATATTGCAAGCAATGTGATGTATGCCTATGTTTATCCAAGGATCACAGTGGAGGATTATTTGAAAAGTAGTAATGAGGATGTTTAG 897 0.4192 MRFTDHSHQKNDPPLFTLGLLGQADQCSHKNGSLLVDPGLDISSLPKHVNECYNKDGLSFVCPDPPSKHVDQCSQKNISVLHGPCLVGSSLSKHPGECNQKNGSALHDPCLVDSSMFKHPGECNQKNGSSLVCPHPVDEVLALIQTYQIEFDMENSMGRLPGCFVREFACSPTSTLPKSFVHSYAKELSPYDLHSGSLFLPWNGFGESNFSHLFSDLILVDSAGSQYTCALKIVLDSSGDMAYNLSGGWTDFCTTHNVVEGDSVEFSVAPYIASNVMYAYVYPRITVEDYLKSSNEDV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04613 298 CDD B3_DNA 182 266 IPR003340 GO:0003677
Trre1g04613 298 Pfam B3 DNA binding domain 188 267 IPR003340 GO:0003677
Trre1g04613 298 SUPERFAMILY DNA-binding pseudobarrel domain 182 268 IPR015300 -
Trre1g04613 298 Gene3D - 174 278 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04613 Trre-Chr1 52206143 52207536 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g04613 B3 2.5e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04613 - K24461 tpra:123889462 93.2041