Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04608 ATGGCTTCTACTTCAAGGAGATTACCAACACCTGAAGAAAGAGAAAAATGGAAACACATTTTTGACACTACCATAGATCCAAATCTGGTACCAATTGAAATCCCTCAGCCTTTTTTCAACAAAATGAAAAGTGAGTTTATAAAGCACACATTTGGTTGGATCAGGGGTCCCAAAAAAATGAAATTCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGCTGTACCAACAAGGGTGACACTTAGCTATGTGATTGACGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCAGAGGAAACTTTGAAAAGGAAGCATAAAAATGATGATCAAGATGAGCCAAATTCCAAGAGGTGCAAGAGACCTAAAGCCAACAAACAAGCTGTGTATTTGAAGTCCCCCCCTCCATGTCAAAATCCCAAGAATAATGATGATCAAGATGAGCCAAATTCCAAGAGGTGCAAGAAACCTAGAGGCAACAAACAAGCTATGTCTTTGAAGTCCCCCCCTCCATGTAAAAAACAGAAAATTCTGAAGTCTACCCCAAAGGAATTAAGCAAACAACGACACTCTAAGCATTCAAGGAAACCAGTAATTGTAAAGCTGAATCCTGATGGAAACTATAGTTGGGAGAAGATTGTAACTACAGCTGCTGCAGCTGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTGTCTACATTGTTTTTGGGAGAAAAACAAAACAAGATGTTGGTCCAAGCTGGAGCAGGAGATACATTCTCTTGCAAGCTTATTACAGCGGGAAGGAATGCAGCTGAAAAATATATATCAAAAGAGTGGTCCAAATTTGTGAGAAGAAACAACCTCCAAGCTGGAGACAAGCTCATTTTCACTCTTCAGAACCCACCAACAAAACTCCTGATTCAGATCATCCGTTATAGTGCTCACGACTGA 1008 0.3978 MASTSRRLPTPEEREKWKHIFDTTIDPNLVPIEIPQPFFNKMKSEFIKHTFGWIRGPKKMKFMVRYLQSNSGIKLSSGVCVSRYFGFAVPTRVTLSYVIDENTFWMRIYPPLQPVKTEFPPEETLKRKHKNDDQDEPNSKRCKRPKANKQAVYLKSPPPCQNPKNNDDQDEPNSKRCKKPRGNKQAMSLKSPPPCKKQKILKSTPKELSKQRHSKHSRKPVIVKLNPDGNYSWEKIVTTAAAADARPQVMHFPKQLSTLFLGEKQNKMLVQAGAGDTFSCKLITAGRNAAEKYISKEWSKFVRRNNLQAGDKLIFTLQNPPTKLLIQIIRYSAHD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04608 335 Gene3D - 183 333 IPR015300 -
Trre1g04608 335 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 124 331 IPR044837 -
Trre1g04608 335 Pfam B3 DNA binding domain 250 330 IPR003340 GO:0003677
Trre1g04608 335 CDD B3_DNA 250 330 IPR003340 GO:0003677
Trre1g04608 335 MobiDBLite consensus disorder prediction 119 217 - -
Trre1g04608 335 MobiDBLite consensus disorder prediction 120 143 - -
Trre1g04608 335 SUPERFAMILY DNA-binding pseudobarrel domain 236 331 IPR015300 -
Trre1g04608 335 ProSiteProfiles B3 DNA-binding domain profile. 235 332 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04608 Trre-Chr1 52164873 52166608 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g04608 B3 3.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04608 - K12567 tpra:123904760 199.519