Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04600 ATGGACTTGTACGTTCGGAGCCCCACTAGAAACGGATCCAACCCGTTAAATCAACATGAATGGCGTTCACCCACCGCCGACACAACCGCTCTCGGAGAGTCGATGTGGCATTTAACACTTGGTGGTGGTGAATCTTACCCTGAACGACATGGTGTGCCTAATTGTGCTTATTATATGCGAACTGGGTTCTGTGGATATGGTGGAAGGTGTCGATTCAATCATCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACGGGGGACTACCCAGAACGGCTTGGGGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCCTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGTGAGAATGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACGTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCCCCAACTGTTCCTCTGCCTGAACAGTTTGGAGGAGCTTCCCCAAGCGTGAGAGTGGCTAGACCTCCTGTGTTACCTGGTTCGTATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCTCCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCAACTTCTCTATATGGAGTGACCCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGCAGGAAGCAGCCTGCAAGAAAAAGTATTTCCTGAAAGACCTGGTGAACCGGTCTGCCAATACTATCTGAGAACCGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCACAGGATCAGGGTGTTGCACGACCACTTCTCAGTCCCATTGGTCTTCCGTTACGCCCGGGTGTACAGCCTTGTTCGTTTTATTTACAAAATGGGCACTGCAAGTTTGGCTCGATGTGCAAGTTTGATCATCCTGTGGGGTCTATGAGATACAGTCCATCAGCATCTTCTCTCATCGATGTTCCAGTTGCTCCATACCCAGTTAGGTCTTTACTGTCTAACCTGGTTCCTTCAACAACGTATTCAGAGTTTCGGCCTGAACTGAAGTCAGATCCCAAAAAGGAATCCTATCCAGCCAGAATGCATTCTTCTGGAAATGTTTCTGGTACTTCAGTCGGTTTAATTTTTTCACAAGGCGGGTCTGTCTCACTGTCTGATGCGCAACTCTCAAGCCAGAGTTCTGCTTCGTTGAATGGTAGCAGAAGCAGCAGACAAAGTGGTGAGATACATTGA 1419 0.482 MDLYVRSPTRNGSNPLNQHEWRSPTADTTALGESMWHLTLGGGESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGENECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQFGGASPSVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPAGSSLQEKVFPERPGEPVCQYYLRTGDCKFGLACRYHHPQDQGVARPLLSPIGLPLRPGVQPCSFYLQNGHCKFGSMCKFDHPVGSMRYSPSASSLIDVPVAPYPVRSLLSNLVPSTTYSEFRPELKSDPKKESYPARMHSSGNVSGTSVGLIFSQGGSVSLSDAQLSSQSSASLNGSRSSRQSGEIH 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04600 472 PANTHER PROTEIN PHOSPHATASE RELATED 42 379 - -
Trre1g04600 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 367 IPR000571 GO:0046872
Trre1g04600 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Trre1g04600 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 324 IPR000571 GO:0046872
Trre1g04600 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 76 IPR000571 GO:0046872
Trre1g04600 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 121 IPR000571 GO:0046872
Trre1g04600 472 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Trre1g04600 472 SMART c3hfinal6 341 368 IPR000571 GO:0046872
Trre1g04600 472 SMART c3hfinal6 94 121 IPR000571 GO:0046872
Trre1g04600 472 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Trre1g04600 472 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Trre1g04600 472 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Trre1g04600 472 MobiDBLite consensus disorder prediction 7 24 - -
Trre1g04600 472 SUPERFAMILY CCCH zinc finger 52 78 IPR036855 GO:0046872
Trre1g04600 472 MobiDBLite consensus disorder prediction 405 429 - -
Trre1g04600 472 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Trre1g04600 472 ProSiteProfiles Zinc finger C3H1-type profile. 94 122 IPR000571 GO:0046872
Trre1g04600 472 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g04600 472 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
Trre1g04600 472 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Trre1g04600 472 SUPERFAMILY CCCH zinc finger 343 372 IPR036855 GO:0046872
Trre1g04600 472 Gene3D - 296 378 - -
Trre1g04600 472 Gene3D - 93 177 - -
Trre1g04600 472 Gene3D - 37 89 - -
Trre1g04600 472 MobiDBLite consensus disorder prediction 449 472 - -
Trre1g04600 472 SUPERFAMILY CCCH zinc finger 143 168 IPR036855 GO:0046872
Trre1g04600 472 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Trre1g04600 472 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04600 Trre-Chr1 52060912 52064989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04600 19 402 C2H2 Transcription Factor Family AT5G18550 52.228 1.09e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre1g04600 zf-CCCH 5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04600 - - gmx:100812475 806.208