Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04598 ATGGGTGATAACAACAACAACAACAATTTCACATCTCATCAAGAAGATCATGAAGTAATCAAAGAGCAAGATCGTTTACTTCCAATAGCTAATGTTGGAAGAATCATGAAACAAATCTTGCCACCAAATGCAAAAATCTCCAAAGAAGCTAAAGAAACCATGCAAGAGTGTGTTTCTGAGTTTGTTAGCTTTGTAACTGGTGAAGCATCTGACAAGTGTCACAAGGAGAAGAGAAAGACAGTCAACGGTGATGATGTTTGTTGGGCCATGACTAACCTAGGGTTTGATGATTACTCTGAGCCACTCAAAAGTTTATCTAGATCTGAGTAG 330 0.3818 MGDNNNNNNFTSHQEDHEVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDVCWAMTNLGFDDYSEPLKSLSRSE 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04598 109 SUPERFAMILY Histone-fold 23 104 IPR009072 GO:0046982
Trre1g04598 109 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Trre1g04598 109 PRINTS CCAAT-binding transcription factor subunit A signature 92 109 - -
Trre1g04598 109 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Trre1g04598 109 Gene3D Histone, subunit A 14 108 IPR009072 GO:0046982
Trre1g04598 109 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Trre1g04598 109 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 104 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04598 Trre-Chr1 52022211 52023158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04598 14 103 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.444 5.32e-55 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre1g04598 CBFD_NFYB_HMF 1.6e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04598 K08065 - gmx:100817274 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04598 1 52022211 52023158 Trre1g04598 1 52022211 52023158 ECH