Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04593 ATGGATTATGCAGGTAGAGGCGGTGCTTCTGACTTAACCTCCGATGTGAAAGATAATCTATGTGCCCAAATTTGGCTTAATTCTGTTGGATCACTATACATCCCTAAGATCGGAGATAAGACTTTCTACTTCCCTCAAGGACACATGGAGCAGCTCGCAAGACACCATCAACAAGTGTCGTCGATCATGGACATGATCCGTCACTTAAATTTACCATATAAAATTTTATGTGTAGTTATTGCTGCTCAGTTACAGGCACATGTTAACACAGATGAGCCTGTCGCTCTTCTTACATTAATCCCATTGAAGCAACAAGAGTTTATGCTAGAGGAAAATCATCAATTTGATGATAATCCTAGTGAAGTGTACTCCTTTACCAAGATATTGACTTCAATGGAAGCTAGTCCACATGCTGTTGGACTTTATATTCCAAAGGAACATGCAAATAGATGCTTCCCCTCACTGGATATGACTGTTCAACCAACAATGCAAGATCTTGTGGTGAAGGACTTGCATGGAATTGAGTGGAATTTCCGACATATTTACTGTGATCATAAAAAGGAACACATGCTGACCTGTGGCTGGAGCTCGTTCGTAAATTCTAAAAAACTTGTTCCTGGAGATTCATGCATTTTCGTCAGAGGAGAGAATGGTGAAATTGGTATTGGCATTCATCGAGCAATGAGACAACATAGTGATATAGGGACAACATCGTCTCCACTTGGTTATATGTGTGCTGCTTCCCATGCTGTTTCTGCAGGAACTATGTTCCATGTCCAGTACTACCCTTGGACTGCTCCATTTGAGTTTATGATCCCTATGAAAACTTATGATGAGTCCATTGAGAGAGACTATTTCATTGGAAGGAGGGTAAGCAAGTTGGCTGAACCGGAAGGATCTGCAAGAAGATTTGGTACAATTGTTGGTATGGAAGATATCGATCCCATTATGTGGCCTGGATCTGAATGGAGATCTATCAAGGTGCAATGGGATTCCACACCAAATACTTTTACACAATTTGAAAGAGTATGTCCTTGGTGGATTGAGCCTTTGGAATCTCCTAAGATTAAGAGCTTTCCTATTCTCCCTTTATCAAATGAGGTTATTGGGAGTTCATCCATGCCTGAATATCACACTGTGGACGTGGACATGGATAAGGATGGTGAACAACATTACAATACTAGAAATGATGAAAATTCAATTTTCTTCATTCTTGCTTTCTTTATATTACTTTGCATTTTTACATTTGTGATTTTTGTCTTTCGTCCTCTTTTGTAA 1278 0.3967 MDYAGRGGASDLTSDVKDNLCAQIWLNSVGSLYIPKIGDKTFYFPQGHMEQLARHHQQVSSIMDMIRHLNLPYKILCVVIAAQLQAHVNTDEPVALLTLIPLKQQEFMLEENHQFDDNPSEVYSFTKILTSMEASPHAVGLYIPKEHANRCFPSLDMTVQPTMQDLVVKDLHGIEWNFRHIYCDHKKEHMLTCGWSSFVNSKKLVPGDSCIFVRGENGEIGIGIHRAMRQHSDIGTTSSPLGYMCAASHAVSAGTMFHVQYYPWTAPFEFMIPMKTYDESIERDYFIGRRVSKLAEPEGSARRFGTIVGMEDIDPIMWPGSEWRSIKVQWDSTPNTFTQFERVCPWWIEPLESPKIKSFPILPLSNEVIGSSSMPEYHTVDVDMDKDGEQHYNTRNDENSIFFILAFFILLCIFTFVIFVFRPLL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04593 425 SMART B3_2 125 228 IPR003340 GO:0003677
Trre1g04593 425 Gene3D - 284 356 - -
Trre1g04593 425 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Trre1g04593 425 Pfam Auxin response factor 247 327 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre1g04593 425 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Trre1g04593 425 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 358 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre1g04593 425 CDD B3_DNA 124 226 IPR003340 GO:0003677
Trre1g04593 425 Gene3D - 122 228 IPR015300 -
Trre1g04593 425 SUPERFAMILY DNA-binding pseudobarrel domain 120 230 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04593 Trre-Chr1 51981143 51988804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04593 6 385 B3 DNA Binding Superfamily AT5G62000 41.103 1.38e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre1g04593 B3 4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04593 - - tpra:123888364 613.994