LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g04587	ATGGTCGAAACCCGTCGCGGTTCTTCTTCTTCTTCCAAACGCCCTCTTTCTTCTCCTTCTCCTTCCAACACCAAACGATCCAAGGTTTCTGAAGATGCTTCATCTACAACCTTACCTTCTGTTCCGGTTAAAGAATCTGAGACAAGAAACGAATCTGGTGAACCTATCATACAACAACAACAACAACAACAACAACCATCTGATCTACCTGAAACGGCGTCGTTGAACGTTGTTGATGGTGATAAAGATAAGGCTCCATCTGTGCCAATTCAAGCTGAACCTTTGGTGTCTTCTCACTGTCCAGGTGAAACTGCTGAGAAATCGAAGGTGGCGGTTGCGCCGGTTGTTTCTTCTCGGAAAAAACGGACGGCTGCTAAACCAATTCCTAAGGTTCCTTGGGGGAAGCTTATATCTCAATGTTCTCAGAATCCTCACCTGTCCATTAGTGATCCAATCTTCACTGTTGGTCAAGGTCGTCAGAGTAATTTGGTGCTTAAAGATCCAACCGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAGCAACATGGAGGTTCATCAGTTGCCCTACTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAATGGCAAGACTTACCGAAGGAATGCCCGACTGATTTTAAATGGAGGCGATGAGGTGATCTTTGGCATTTCAGGAAAACATGCTTACATCTTTCAGCAGCTGAAAAGTAATAATGTTTCTAGTGCTGGTATACCTCCTTCTGTGAGTATTTTAGAAGCCCAGAGTGCTGCAATGAACGGGATGCAAGTTGAAGCTAGATCTGGAGACCAGTCGGCTGTTGCAGGAGCATCGATATTGGCCTCTCTGTCCAATATTCACAAAGATCTATCTCTCATTACACCACCTCCAGCTAAAGCATGCAAGAAACAGAGTGCTGATAATTCAACACCACCTTCTGACCATGGGGATAATGGTCCGGACAGTGAAATGAAAGATACCACAAGTAATGATGAATCAGCTGGATTTTTCCCTTCTGGTAAAGATGTTCCTGCATCCTCTACCACTGGTAATGAAAATCCTAGCCTTGACACCATGGATGTGGATGCCAATGTGGGCACAGATGTTGGGAAGATGACTGCTGCTAATTATGAATTGAGGCCGTTACTGTGCATGCTTACTGGCTCAGGAACGGAATTTGATTTAAGTGGCAGCATTCACAAGATTTTAGAAGATCGAAAGGAACTTAAAGATGCTGATACACCTACAATATTGGCATCCACTAGGCGACAAGCATTTAGAGACAGCCTAGAACAGAGAATCCTCGATGCTGAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATCTAAGCAATACAACAAAGAATGTGTTGATTGCTTCTACATACATTCATTTGAAGTGCAATGGCTTTGGAAAATACGCTTCAGATCTCCCGTCGGTGTGCCCACGGATATTATTATCTGGTCCTTCAGGTTCGGAAATATACCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTAGGCTACTGATTGTGGAATCACTTTCGCTACCCGGTGGAACACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAAGCCCGAAAGGCCATCTGTTTTGTCTAAGAGAAGTAGCCAGACTTCTATATTACATCATAGGAAACCCACTTCTAGTGTTGATGCTGAAATTGTTGGTGGTTCTACATTAAGTTCGCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGCCACTGCTCTTAAAAAAGGTGATCGAGTAAAATTTGTCGGTAACTTTCCACCTGCTGTGTCGTCACTACAAAATTATTCTTTAAGTTACTCATCCATATCTGGCAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGATTCTTCAAAAATTGGGGTCAGATTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAACCATTTACAACGAATAGAGAGTTCAGGGGGGGATGACGACAAAGTCGCAATTAATGAAATATTTGAGGTTGCCTCTAATCAATGTAAAAGTGGTGCACTTGTTTTGTTCATCAAAGATATAGAGAAGGCAATGGTTGGGAACACAGATGTTTTGAAAAGTAAATTTGAAGCCCTGCCACAGAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGAGAAGACCCATCCTGGGGGACTTTTGTTTACGAAGTTCGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGTAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACGAAGCAACTGGGCCGCCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGACTGGAAGAAACAGTTAGATTGTGATATTGAAACTATGAAAGCACAATCCAATGTTGACATGCTTCGTTCGGTTCTCAAAAGAATAGGATGGGATTGTTCGGACCTTGAGACTATTTGCATCAAAGATCAAACCCTAACCAGTGAAAATGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATTTGAAGCTTCCACCCAAGACGTAAAGCGTGTGATATCTGCAGAAAGTATTAAGTATGGGTTTGACATTTTTCAAGGCATCCAAAATGAGAATAAGAACGTAAAAAAGTCGCTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAGCTGCTTGGTGATGTTATTCCCCCAACTGAACTTGGGGTCACATTTGAAGATATTGGAGCTTTAGAAAATGTAAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATAAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGCGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTGGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGACGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCGGCGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTGCGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCCGCTACAAACAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGATTGATGGTTGATTTGCCGGATGCTCCGAATAGAGGAAAAATTTTGAGAGTCATTTTAGCGAAAGAAGATTTAGCACCCGATGTTGATTTGGAAGCAATAGCAAATATGACCGATGGATACTCAGGAAGTGACTTAAAGAATTTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCTGAGAACAAGCCTGAACCTGAATTGTGTAGCAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCGGAGTCAACAAATATGAATGAGCTGCAACAATGGAATGACCTCTACGGTGAAGGTGGATCGAGAAAAATGAGATCTTTAAGCTATTTCATGTGA	3765	0.4239	MVETRRGSSSSSKRPLSSPSPSNTKRSKVSEDASSTTLPSVPVKESETRNESGEPIIQQQQQQQQPSDLPETASLNVVDGDKDKAPSVPIQAEPLVSSHCPGETAEKSKVAVAPVVSSRKKRTAAKPIPKVPWGKLISQCSQNPHLSISDPIFTVGQGRQSNLVLKDPTVGNVLCKLSHIEQQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGISGKHAYIFQQLKSNNVSSAGIPPSVSILEAQSAAMNGMQVEARSGDQSAVAGASILASLSNIHKDLSLITPPPAKACKKQSADNSTPPSDHGDNGPDSEMKDTTSNDESAGFFPSGKDVPASSTTGNENPSLDTMDVDANVGTDVGKMTAANYELRPLLCMLTGSGTEFDLSGSIHKILEDRKELKDADTPTILASTRRQAFRDSLEQRILDAENIDVSFETFPYYLSNTTKNVLIASTYIHLKCNGFGKYASDLPSVCPRILLSGPSGSEIYQETLSKALAKHFGARLLIVESLSLPGGTPSKEVDSAKESSKPERPSVLSKRSSQTSILHHRKPTSSVDAEIVGGSTLSSQAMLKQEVSTASSKATALKKGDRVKFVGNFPPAVSSLQNYSLSYSSISGRGPSYGFRGKVVLAFEDNDSSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGDDDKVAINEIFEVASNQCKSGALVLFIKDIEKAMVGNTDVLKSKFEALPQNIVVIGSNTQLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLGRLFPNKVTIQLPQDEALLSDWKKQLDCDIETMKAQSNVDMLRSVLKRIGWDCSDLETICIKDQTLTSENVEKIIGWAISYHFMHSFEASTQDVKRVISAESIKYGFDIFQGIQNENKNVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYFM	1254

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g04587	1254	MobiDBLite	consensus disorder prediction	344	361	-	-
	Trre1g04587	1254	MobiDBLite	consensus disorder prediction	526	563	-	-
	Trre1g04587	1254	SUPERFAMILY	SMAD/FHA domain	133	228	IPR008984	GO:0005515
	Trre1g04587	1254	Pfam	ATPase family associated with various cellular activities (AAA)	990	1119	IPR003959	GO:0005524\|GO:0016887
	Trre1g04587	1254	MobiDBLite	consensus disorder prediction	296	361	-	-
	Trre1g04587	1254	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	948	1123	-	-
	Trre1g04587	1254	Gene3D	-	948	1228	IPR027417	-
	Trre1g04587	1254	Pfam	AAA+ lid domain	1143	1179	IPR041569	-
	Trre1g04587	1254	SMART	AAA_5	986	1123	IPR003593	GO:0016887
	Trre1g04587	1254	Gene3D	-	1122	1216	-	-
	Trre1g04587	1254	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	949	1226	IPR027417	-
	Trre1g04587	1254	ProSitePatterns	AAA-protein family signature.	1093	1112	IPR003960	GO:0005524\|GO:0016887
	Trre1g04587	1254	MobiDBLite	consensus disorder prediction	1	89	-	-
	Trre1g04587	1254	Gene3D	-	132	244	-	-
	Trre1g04587	1254	MobiDBLite	consensus disorder prediction	545	561	-	-
	Trre1g04587	1254	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	426	1253	-	-
	Trre1g04587	1254	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g04587	Trre-Chr1	51894255	51903813	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g04587	949	1195	Calmodulin-binding Proteins	AT3G56690	40.476	9.61e-42	165

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g04587	-		-	gmx:100801477	1878.22