LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g04586	ATGGTCGAAACCCGTCGCGGTTCTTCTTCTTCTTCCAAACGCCCTCTTTCTTCTCCTTCTCCTTCCAACACCAAACGATCCAAGGTTTCTGAAGATGCTTCATCTACAACCTTACCTTCTGTTCCGGTTAAAGAATCTGAGACAAGAAACGAATCTGGTGAACCTATCATACAACAACAACAACAACAACAACAACCATCTGATCTACCTGAAACGGCGTCGTTGAACGTTGTTGATGGTGATAAAGATAAGGCTCCATCTGTGCCAATTCAAGCTGAACCTTTGGTGTCTTCTCACTGTCCAGGTGAAACTGCTGAGAAATCGAAGGTGGCGGTTGCGCCGGTTGTTTCTTCTCGGAAAAAACGGACGGCTGCTAAACCAATTCCTAAGGTTCCTTGGGGGAAGCTTATATCTCAATGTTCTCAGAATCCTCACCTGTCCATTAGTGATCCAATCTTCACTGTTGGTCAAGGTCGTCAGAGTAATTTGGTGCTTAAAGATCCAACCGTTGGTAATGTTTTGTGCAAGTTGAGCCACATAGAGCAGCAACATGGAGGTTCATCAGTTGCCCTACTGGAAATCACAGGGGGTAAAGGTGTTGTTCAAGTCAATGGCAAGACTTACCGAAGGAATGCCCGACTGATTTTAAATGGAGGCGATGAGGTGATCTTTGGCATTTCAGGAAAACATGCTTACATCTTTCAGCAGCTGAAAAGTAATAATGTTTCTAGTGCTGGTATACCTCCTTCTGTGAGTATTTTAGAAGCCCAGAGTGCTGCAATGAACGGGATGCAAGTTGAAGCTAGATCTGGAGACCAGTCGGCTGTTGCAGGAGCATCGATATTGGCCTCTCTGTCCAATATTCACAAAGATCTATCTCTCATTACACCACCTCCAGCTAAAGCATGCAAGAAACAGAGTGCTGATAATTCAACACCACCTTCTGACCATGGGGATAATGGTCCGGACAGTGAAATGAAAGATACCACAAGTAATGATGAATCAGCTGGATTTTTCCCTTCTGGTAAAGATGTTCCTGCATCCTCTACCACTGGTAATGAAAATCCTAGCCTTGACACCATGGATGTGGATGCCAATGTGGGCACAGATGTTGGGAAGATGACTGCTGCTAATTATGAATTGAGGCCGTTACTGTGCATGCTTACTGGCTCAGGAACGGAATTTGATTTAAGTGGCAGCATTCACAAGATTTTAGAAGATCGAAAGGAACTTAAAGATGCTGATACACCTACAATATTGGCATCCACTAGGCGACAAGCATTTAGAGACAGCCTAGAACAGAGAATCCTCGATGCTGAGAATATTGATGTCTCTTTTGAAACTTTCCCATATTATCTAAGCAATACAACAAAGAATGTGTTGATTGCTTCTACATACATTCATTTGAAGTGCAATGGCTTTGGAAAATACGCTTCAGATCTCCCGTCGGTGTGCCCACGGATATTATTATCTGGTCCTTCAGGTTCGGAAATATACCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTAGGCTACTGATTGTGGAATCACTTTCGCTACCCGGTGGAACACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCAAAGCCCGAAAGGCCATCTGTTTTGTCTAAGAGAAGTAGCCAGACTTCTATATTACATCATAGGAAACCCACTTCTAGTGTTGATGCTGAAATTGTTGGTGGTTCTACATTAAGTTCGCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGCCACTGCTCTTAAAAAAGGTGATCGAGTAAAATTTGTCGGTAACTTTCCACCTGCTGTGTCGTCACTACAAAATTATTCTTTAAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTGTACTTGCTTTTGAAGACAACGATTCTTCAAAAATTGGGGTCAGATTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCATATCGAAGATGATCATGGGTTCTTTTGTTCTGCAAACCATTTACAACGAATAGAGAGTTCAGGGGGGGATGACGACAAAGTCGCAATTAATGAAATATTTGAGGTTGCCTCTAATCAATGTAAAAGTGGTGCACTTGTTTTGTTCATCAAAGATATAGAGAAGGCAATGGTTGGGAACACAGATGTTTTGAAAAGTAAATTTGAAGCCCTGCCACAGAATATTGTGGTAATTGGCTCAAATACTCAGCTGGACAGTCGTAAGGAGAAGACCCATCCTGGGGGACTTTTGTTTACGAAGTTCGGGAGCAATCAGACAGCTCTACTTGATCTTGCTTTTCCGGATAACTTTAGTAAACTACATGATAGGAGCAAAGAAAGCTCCAAAGTAACGAAGCAACTGGGCCGCCTTTTCCCAAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGACTGGAAGAAACAGTTAGATTGTGATATTGAAACTATGAAAGCACAATCCAATGTTGACATGCTTCGTTCGGTTCTCAAAAGAATAGGATGGGATTGTTCGGACCTTGAGACTATTTGCATCAAAGATCAAACCCTAACCAGTGAAAATGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATTTGAAGCTTCCACCCAAGACGTAAAGCGTGTGATATCTGCAGAAAGTATTAAGTATGGGTTTGACATTTTTCAAGGCATCCAAAATGAGAATAAGAACGTAAAAAAGTCGCTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAGCTGCTTGGTGATGTTATTCCCCCAACTGAACTTGGGGTCACATTTGAAGATATTGGAGCTTTAGAAAATGTAAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTAAAAGGCCTGAACTGTTTTGTAAAGGACAACTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATAAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGCGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCCCTGGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGACGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCCGGCGAGCACGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTGCGTACAAAAGAAAAAGAGCGTATACTTGTTCTTGCCGCTACAAACAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCAAGGAGATTGATGGTTGATTTGCCGGATGCTCCGAATAGAGGAAAAATTTTGAGAGTCATTTTAGCGAAAGAAGATTTAGCACCCGATGTTGATTTGGAAGCAATAGCAAATATGACCGATGGATACTCAGGAAGTGACTTAAAGAATTTGTGTGTCACAGCAGCTCACTGCCCAATAAGGGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCTGAGAACAAGCCTGAACCTGAATTGTGTAGCAGTGCAGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCGGAGTCAACAAATATGAATGAGCTGCAACAATGGAATGACCTCTACGGTGAAGGTGGATCGAGAAAAATGAGATCTTTAAGCTATTTCATGTGA	3744	0.4239	MVETRRGSSSSSKRPLSSPSPSNTKRSKVSEDASSTTLPSVPVKESETRNESGEPIIQQQQQQQQPSDLPETASLNVVDGDKDKAPSVPIQAEPLVSSHCPGETAEKSKVAVAPVVSSRKKRTAAKPIPKVPWGKLISQCSQNPHLSISDPIFTVGQGRQSNLVLKDPTVGNVLCKLSHIEQQHGGSSVALLEITGGKGVVQVNGKTYRRNARLILNGGDEVIFGISGKHAYIFQQLKSNNVSSAGIPPSVSILEAQSAAMNGMQVEARSGDQSAVAGASILASLSNIHKDLSLITPPPAKACKKQSADNSTPPSDHGDNGPDSEMKDTTSNDESAGFFPSGKDVPASSTTGNENPSLDTMDVDANVGTDVGKMTAANYELRPLLCMLTGSGTEFDLSGSIHKILEDRKELKDADTPTILASTRRQAFRDSLEQRILDAENIDVSFETFPYYLSNTTKNVLIASTYIHLKCNGFGKYASDLPSVCPRILLSGPSGSEIYQETLSKALAKHFGARLLIVESLSLPGGTPSKEVDSAKESSKPERPSVLSKRSSQTSILHHRKPTSSVDAEIVGGSTLSSQAMLKQEVSTASSKATALKKGDRVKFVGNFPPAVSSLQNYSLRGPSYGFRGKVVLAFEDNDSSKIGVRFDKSIPDGNDLGGHIEDDHGFFCSANHLQRIESSGGDDDKVAINEIFEVASNQCKSGALVLFIKDIEKAMVGNTDVLKSKFEALPQNIVVIGSNTQLDSRKEKTHPGGLLFTKFGSNQTALLDLAFPDNFSKLHDRSKESSKVTKQLGRLFPNKVTIQLPQDEALLSDWKKQLDCDIETMKAQSNVDMLRSVLKRIGWDCSDLETICIKDQTLTSENVEKIIGWAISYHFMHSFEASTQDVKRVISAESIKYGFDIFQGIQNENKNVKKSLKDVVTENEFEKKLLGDVIPPTELGVTFEDIGALENVKDTLKELVMLPLKRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKEKERILVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNRGKILRVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPEPELCSSADIRPLKMEDFRYAHEQVCASVSSESTNMNELQQWNDLYGEGGSRKMRSLSYFM	1247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g04586	1247	MobiDBLite	consensus disorder prediction	344	361	-	-
	Trre1g04586	1247	Pfam	AAA+ lid domain	1136	1172	IPR041569	-
	Trre1g04586	1247	Gene3D	-	941	1221	IPR027417	-
	Trre1g04586	1247	SMART	AAA_5	979	1116	IPR003593	GO:0016887
	Trre1g04586	1247	MobiDBLite	consensus disorder prediction	526	563	-	-
	Trre1g04586	1247	Pfam	ATPase family associated with various cellular activities (AAA)	983	1112	IPR003959	GO:0005524\|GO:0016887
	Trre1g04586	1247	Gene3D	-	1115	1209	-	-
	Trre1g04586	1247	ProSitePatterns	AAA-protein family signature.	1086	1105	IPR003960	GO:0005524\|GO:0016887
	Trre1g04586	1247	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	941	1116	-	-
	Trre1g04586	1247	SUPERFAMILY	SMAD/FHA domain	133	228	IPR008984	GO:0005515
	Trre1g04586	1247	MobiDBLite	consensus disorder prediction	296	361	-	-
	Trre1g04586	1247	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	426	1246	-	-
	Trre1g04586	1247	MobiDBLite	consensus disorder prediction	1	89	-	-
	Trre1g04586	1247	Gene3D	-	132	244	-	-
	Trre1g04586	1247	MobiDBLite	consensus disorder prediction	545	561	-	-
	Trre1g04586	1247	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	942	1219	IPR027417	-
	Trre1g04586	1247	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g04586	Trre-Chr1	51894255	51903813	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g04586	942	1188	Calmodulin-binding Proteins	AT3G56690	40.476	1.12e-41	164

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g04586	-		-	gmx:100801477	1894.4