Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04582 ATGTTTTATAGACTACTAACCATATTTGTTATTTTTAATCTCTCACAGTATGGAGGTTCATCTGTTGCGTTGCTGGAAGTCATCGGGAGTAAAGGTGTTGTTAAAGTCAACGGAAAGACGTATGGGAATAAATCCCGTCTTATTTTAAGTGGAGGTGATGAAGTCGTCTTCGGTGTTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCAATAAAAATATCACAACTCCCAACATACCTTCTCCTGTGAGTATTTTAGAAGCCCAGGGTGCTTCAATAACTGGAACGCAAGTTGATGCAAGATCTGGTGACCTGTCGGCTGTTGCTGGAGATTCAATATTGGCCTCTGTTTCTGTTAATGAAGATTTATCTACCATTCCTCTTTCTGTTAACGCTGACACAAACATGCAGCAGCAGACTGATGTTTCATCACTACCTGCTGGCAACGGGGATGATAAGGCAGGCGTTGATATGAAGCACAGCATCATCAATAACGAACCGGATGGAGTTTCTTCTGCTGAGAAAACTGTCCGTCCGTCCTCTACCACCGTTGAGGAAGATCCTAAGGATGACACTGTAGAAGTCAATGCCAGTGTGGATGCAGATGTTGGGAAGATGACTGCTGCTACTTGCAAATTGAGACCATTATTGCACAAGCTTTCTGGATCATGTTCCGAATTTGATTTGAGTGGCAACATTGCCAAGATATTGGAAGAACGCAAGGGATTATTGGAAGAACGCAAGGGATTAAAGGAACTCCTTAAAAATGTTGGTACCTCAACAATACTGGCATCGCCCAAGCAACAAGCTATTAAAGATAGCTTACAAAAAAAAGATAGCTTACAGCTGAGAATTCTCAATGCTAATAATATTGATGTTTCATTTGAAAATTTCCCATATTATCTAAGTGATACAACAAAGAACGTTTTGATCGCTTCTGCATACATTCATTTGAAGTGCAATGCATCCGGAAAATATGTTTCAGAACTTCCGTCGTTGTCTCCACGGATTTTGTTATCTGGCCCTGCAGGCTCTGAAATATATCAGGAGTCTCTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTTGGCTACTAATTGTAGATTCTCTTTCACCTCCCGGTCGAACACCATCGAAGGAAGCTGATCCTACTAAAGAAAGTTCAAGGCCTGAAAGACCGTCTGTGTTTACTAAGAGAAGTACTCCGGCTGCTACAATACATATACAGTCTAAGAAACCGACTTCTAGTGTTGATGCCCAAATTATTGGCGGATCTGCATCAAGTTCACAGTTTATACTGAAACAAGAAGTTTCTATGGCATCGTCAAAAGGCAGTACTCTTAAAACAGGTGATCGGGTAAAATATGTTGGCGATTTCCCTTCTGCTGCCTCATCACCACAAGTTTTTCCTTCAAGGGGACCAAGTTATGGCAGCCGGGGCAAAGTTCTCCTTACTTTTGAAAATAACGCTTCAAAAATTGGAGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAGATGACCGTGGCTTCTTTTGTCCCGCCAATCATTTGGTACTAGTAGATGGTGTTGGAGGGGATGATTCTGGCAAAGCTGCTATTAATGAAATCTTTGAGATTGCCTCTAACCTGAGTAAAACTGGAGCACTAGTGTTGTTGATTAAAGATATAGAGAAGGGTGTGGCTGGAAACTCAGAAGTTTTGAAAAGTAAATTCGGAAGCTTGCCGCAAAATGTTGTAGTAATTGGTTCGCATATCCAACCAGACAGTCGTAAGGAGAAGACCCAACCTGGCAGCCTTCTGTTTACCAAATTTGGAGGCAACCAGACAGCACTACTCGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAACAACTCAACAGGCTCTTCCCAAACAAAGTTACAATTCAGCTACCTCAGGATGAGGTTTTACTTTCTGATTGGAAGCAGCACCTAGAACGCGACATAGAAACTATGAAAGCTCAGTCCAATGTTGCCAGCATTCGCTTAGTCCTCAACAGGTTTGGACTGGATTGCCCTGACCTTGAGACTCTTTCCATCAAAGATCAAACTTTGACAACTGAAAATGTGGAGAAGATTATTGGTTGGGCTATTAGTTACCATTTTATGCATTCATCTGAAACTTCTACCAAAGAATCAAAGCCTGTGATATCTGCTGAGAGTATTCACTATGGCTTCAACATTCTACAGGGTATTCAAAATGAGAACAAGAGCGTAAAAAAGTCATTGAAGGATGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGAAACCTTAAAGGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAATTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTACTTTTTGGCCCCCCTGGTACGGGGAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCAGGAGCAAATTTTATTAACATCTCCATGTCAAGCATTACTTCGAAGTGGTTTGGTGAAGGAGAAAAATATGTTAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCCCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCCATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTACGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAATAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAATTTGCCAGATGCAACAAACAGAGCAAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCGGCTGATGTTGATTTAGAAGCATTAGCAAATATGACTGATGGATACTCTGGAAGTGACCTAAAGAATCTGTGCGTCACAGCAGCACACTGTCCAATACGAGAGATCTTGGAGAAGGAAAAGAAGGAGAGAACCTCCGCATTGGCCGAGAACAAACCTCTACCTGGGTTGTGTAGCAGTGCCGACATTCGTCCCTTAAAGATGGAAGATTTTAAATATGCACACGAGCAGGTATGCGCAAGCGTGTCATCGGATTCAACAAATATGAATGAATTAGTCCAATGGAATGACCTCTATGGTGAAGGTGGATCAAGAAAAAAGACATCTTTGAGCTATTTCATGTAA 3297 0.4125 MFYRLLTIFVIFNLSQYGGSSVALLEVIGSKGVVKVNGKTYGNKSRLILSGGDEVVFGVSGKHAYIFQQLNKNITTPNIPSPVSILEAQGASITGTQVDARSGDLSAVAGDSILASVSVNEDLSTIPLSVNADTNMQQQTDVSSLPAGNGDDKAGVDMKHSIINNEPDGVSSAEKTVRPSSTTVEEDPKDDTVEVNASVDADVGKMTAATCKLRPLLHKLSGSCSEFDLSGNIAKILEERKGLLEERKGLKELLKNVGTSTILASPKQQAIKDSLQKKDSLQLRILNANNIDVSFENFPYYLSDTTKNVLIASAYIHLKCNASGKYVSELPSLSPRILLSGPAGSEIYQESLSKALAKHFGAWLLIVDSLSPPGRTPSKEADPTKESSRPERPSVFTKRSTPAATIHIQSKKPTSSVDAQIIGGSASSSQFILKQEVSMASSKGSTLKTGDRVKYVGDFPSAASSPQVFPSRGPSYGSRGKVLLTFENNASKIGVRFEKPIPDGNDLGGLCEDDRGFFCPANHLVLVDGVGGDDSGKAAINEIFEIASNLSKTGALVLLIKDIEKGVAGNSEVLKSKFGSLPQNVVVIGSHIQPDSRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDEVLLSDWKQHLERDIETMKAQSNVASIRLVLNRFGLDCPDLETLSIKDQTLTTENVEKIIGWAISYHFMHSSETSTKESKPVISAESIHYGFNILQGIQNENKSVKKSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKETLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRAKIMRVILAKEDLAADVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERTSALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSTNMNELVQWNDLYGEGGSRKKTSLSYFM 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04582 1098 CDD RecA-like_ATAD1 797 963 - -
Trre1g04582 1098 MobiDBLite consensus disorder prediction 394 417 - -
Trre1g04582 1098 Pfam ATPase family associated with various cellular activities (AAA) 834 963 IPR003959 GO:0005524|GO:0016887
Trre1g04582 1098 MobiDBLite consensus disorder prediction 379 393 - -
Trre1g04582 1098 MobiDBLite consensus disorder prediction 374 417 - -
Trre1g04582 1098 Pfam AAA+ lid domain 987 1022 IPR041569 -
Trre1g04582 1098 ProSitePatterns AAA-protein family signature. 937 956 IPR003960 GO:0005524|GO:0016887
Trre1g04582 1098 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 792 968 - -
Trre1g04582 1098 MobiDBLite consensus disorder prediction 165 179 - -
Trre1g04582 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 1072 IPR027417 -
Trre1g04582 1098 Gene3D - 792 1072 IPR027417 -
Trre1g04582 1098 Gene3D - 966 1060 - -
Trre1g04582 1098 MobiDBLite consensus disorder prediction 163 191 - -
Trre1g04582 1098 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 278 1097 - -
Trre1g04582 1098 SMART AAA_5 830 967 IPR003593 GO:0016887
Trre1g04582 1098 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04582 Trre-Chr1 51868496 51877374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04582 793 1025 Calmodulin-binding Proteins AT3G56690 41.350 3.89e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04582 - - gmx:100801477 1575.07