Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04581 ATGGTTGAAACTAGAAGCAGTTCTTCTTCTTCCAAACGTGCTCTTTCTTCTCCTTCATCATCTCCTTCAAACACAAAACGATCCAAGGTCACAGGTGATGTCTCATCTGCTTCTAAACCCTCACCACCGGTCAACGAATCTGGAGAAAGAGAGATACGGTCATCTGATCTACCTCAAACGGAGAAGGTTGTTGATGGTGATAACAACAAGTCTTCTGATGCTTTGGTGTCTCCACCTCAGTGTTTAGAATCAGGTGAAATTGAGGAGAAATCAAGGGGGTTACCGCCACTAGCTCGGTCGAAAAAACGTTGCACGAAATTGAATCCTAAGGCTGCTTGGGGGAAGCTCATTTCTCAATCTTCTGAGAATCCTCACCTGTCAATGTCCGATCCTATCTACACTGCTGGTCAAGGTGGTCACTGTAATTTATGCCTTAAAGATCCCACTCTTAGTAATGTTTTGTGCAAATTGAGCCACATAGAGTATGGAGGTTCATCTGTTGCGTTGCTGGAAGTCATCGGGAGTAAAGGTGTTGTTAAAGTCAACGGAAAGACGTATGGGAATAAATCCCGTCTTATTTTAAGTGGAGGTGATGAAGTCGTCTTCGGTGTTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCAATAAAAATATCACAACTCCCAACATACCTTCTCCTGTGAGTATTTTAGAAGCCCAGGGTGCTTCAATAACTGGAACGCAAGTTGATGCAAGATCTGGTGACCTGTCGGCTGTTGCTGGAGATTCAATATTGGCCTCTGTTTCTGTTAATGAAGATTTATCTACCATTCCTCTTTCTGTTAACGCTGACACAAACATGCAGCAGCAGACTGATGTTTCATCACTACCTGCTGGCAACGGGGATGATAAGGCAGGCGTTGATATGAAGCACAGCATCATCAATAACGAACCGGATGGAGTTTCTTCTGCTGAGAAAACTGTCCGTCCGTCCTCTACCACCGTTGAGGAAGATCCTAAGGATGACACTGTAGAAGTCAATGCCAGTGTGGATGCAGATGTTGGGAAGATGACTGCTGCTACTTGCAAATTGAGACCATTATTGCACAAGCTTTCTGGATCATGTTCCGAATTTGATTTGAGTGGCAACATTGCCAAGATATTGGAAGAACGCAAGGGATTATTGGAAGAACGCAAGGGATTAAAGGAACTCCTTAAAAATGTTGGTACCTCAACAATACTGGCATCGCCCAAGCAACAAGCTATTAAAGATAGCTTACAAAAAAAAGATAGCTTACAGCTGAGAATTCTCAATGCTAATAATATTGATGTTTCATTTGAAAATTTCCCATATTATCTAAGTGATACAACAAAGAACGTTTTGATCGCTTCTGCATACATTCATTTGAAGTGCAATGCATCCGGAAAATATGTTTCAGAACTTCCGTCGTTGTCTCCACGGATTTTGTTATCTGGCCCTGCAGGCTCTGAAATATATCAGGAGTCTCTGTCCAAGGCACTTGCAAAGCATTTTGGTGCTTGGCTACTAATTGTAGATTCTCTTTCACCTCCCGGTCGAACACCATCGAAGGAAGCTGATCCTACTAAAGAAAGTTCAAGGCCTGAAAGACCGTCTGTGTTTACTAAGAGAAGTACTCCGGCTGCTACAATACATATACAGTCTAAGAAACCGACTTCTAGTGTTGATGCCCAAATTATTGGCGGATCTGCATCAAGTTCACAGTTTATACTGAAACAAGAAGTTTCTATGGCATCGTCAAAAGGCAGTACTCTTAAAACAGGTGATCGGGTAAAATATGTTGGCGATTTCCCTTCTGCTGCCTCATCACCACAAGTTTTTCCTTCAAGGGGACCAAGTTATGGCAGCCGGGGCAAAGTTCTCCTTACTTTTGAAAATAACGCTTCAAAAATTGGAGTTAGATTTGAGAAACCAATTCCAGATGGAAATGATCTTGGAGGCCTCTGCGAAGATGACCGTGGCTTCTTTTGTCCCGCCAATCATTTGGTACTAGTAGATGGTGTTGGAGGGGATGATTCTGGCAAAGCTGCTATTAATGAAATCTTTGAGATTGCCTCTAACCTGAGTAAAACTGGAGCACTAGTGTTGTTGATTAAAGATATAGAGAAGGGTGTGGCTGGAAACTCAGAAGTTTTGAAAAGTAAATTCGGAAGCTTGCCGCAAAATGTTGTAGTAATTGGTTCGCATATCCAACCAGACAGTCGTAAGGAGAAGACCCAACCTGGCAGCCTTCTGTTTACCAAATTTGGAGGCAACCAGACAGCACTACTCGATCTTGCTTTTCCGGATAACTTTACTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAACAACTCAACAGGCTCTTCCCAAACAAAGTTACAATTCAGCTACCTCAGGATGAGGTTTTACTTTCTGATTGGAAGCAGCACCTAGAACGCGACATAGAAACTATGAAAGCTCAGTCCAATGTTGCCAGCATTCGCTTAGTCCTCAACAGGTTTGGACTGGATTGCCCTGACCTTGAGACTCTTTCCATCAAAGATCAAACTTTGACAACTGAAAATGTGGAGAAGATTATTGGTTGGGCTATTAGTTACCATTTTATGCATTCATCTGAAACTTCTACCAAAGAATCAAAGCCTGTGATATCTGCTGAGAGTATTCACTATGGCTTCAACATTCTACAGGGTATTCAAAATGAGAACAAGAGCGTAAAAAAGTCATTGAAGGATGTAGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGGTGATGTTATTCCACCAACTGATATTGGGGTCTCATTTGATGATATTGGAGCTTTAGAAAATGTAAAGGAAACCTTAAAGGAATTGGTTATGCTTCCTCTTCAAAGGCCTGAATTATTTTGCAAAGGACAACTAACTAAGCCTTGCAAGGGAATATTACTTTTTGGCCCCCCTGGTACGGGGAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCAGGAGCAAATTTTATTAACATCTCCATGTCAAGCATTACTTCGAAGTGGTTTGGTGAAGGAGAAAAATATGTTAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCCCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCTGGTGAGCATGAGGCCATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTACGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCCACAAATAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAATTTGCCAGATGCAACAAACAGAGCAAAAATTATGAGAGTCATTTTAGCAAAAGAAGATTTGGCGGCTGATGTTGATTTAGAAGCATTAGCAAATATGACTGATGGATACTCTGGAAGTGACCTAAAGAATCTGTGCGTCACAGCAGCACACTGTCCAATACGAGAGATCTTGGAGAAGGAAAAGAAGGAGAGAACCTCCGCATTGGCCGAGAACAAACCTCTACCTGGGTTGTGTAGCAGTGCCGACATTCGTCCCTTAAAGATGGAAGATTTTAAATATGCACACGAGCAGGTATGCGCAAGCGTGTCATCGGATTCAACAAATATGAATGAATTAGTCCAATGGAATGACCTCTATGGTGAAGGTGGATCAAGAAAAAAGACATCTTTGAGCTATTTCATGTAA 3732 0.4183 MVETRSSSSSSKRALSSPSSSPSNTKRSKVTGDVSSASKPSPPVNESGEREIRSSDLPQTEKVVDGDNNKSSDALVSPPQCLESGEIEEKSRGLPPLARSKKRCTKLNPKAAWGKLISQSSENPHLSMSDPIYTAGQGGHCNLCLKDPTLSNVLCKLSHIEYGGSSVALLEVIGSKGVVKVNGKTYGNKSRLILSGGDEVVFGVSGKHAYIFQQLNKNITTPNIPSPVSILEAQGASITGTQVDARSGDLSAVAGDSILASVSVNEDLSTIPLSVNADTNMQQQTDVSSLPAGNGDDKAGVDMKHSIINNEPDGVSSAEKTVRPSSTTVEEDPKDDTVEVNASVDADVGKMTAATCKLRPLLHKLSGSCSEFDLSGNIAKILEERKGLLEERKGLKELLKNVGTSTILASPKQQAIKDSLQKKDSLQLRILNANNIDVSFENFPYYLSDTTKNVLIASAYIHLKCNASGKYVSELPSLSPRILLSGPAGSEIYQESLSKALAKHFGAWLLIVDSLSPPGRTPSKEADPTKESSRPERPSVFTKRSTPAATIHIQSKKPTSSVDAQIIGGSASSSQFILKQEVSMASSKGSTLKTGDRVKYVGDFPSAASSPQVFPSRGPSYGSRGKVLLTFENNASKIGVRFEKPIPDGNDLGGLCEDDRGFFCPANHLVLVDGVGGDDSGKAAINEIFEIASNLSKTGALVLLIKDIEKGVAGNSEVLKSKFGSLPQNVVVIGSHIQPDSRKEKTQPGSLLFTKFGGNQTALLDLAFPDNFTRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDEVLLSDWKQHLERDIETMKAQSNVASIRLVLNRFGLDCPDLETLSIKDQTLTTENVEKIIGWAISYHFMHSSETSTKESKPVISAESIHYGFNILQGIQNENKSVKKSLKDVVTENEFEKKLLGDVIPPTDIGVSFDDIGALENVKETLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNRAKIMRVILAKEDLAADVDLEALANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERTSALAENKPLPGLCSSADIRPLKMEDFKYAHEQVCASVSSDSTNMNELVQWNDLYGEGGSRKKTSLSYFM 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04581 1243 MobiDBLite consensus disorder prediction 1 101 - -
Trre1g04581 1243 MobiDBLite consensus disorder prediction 524 538 - -
Trre1g04581 1243 MobiDBLite consensus disorder prediction 519 562 - -
Trre1g04581 1243 CDD RecA-like_ATAD1 942 1108 - -
Trre1g04581 1243 SMART AAA_5 975 1112 IPR003593 GO:0016887
Trre1g04581 1243 Pfam ATPase family associated with various cellular activities (AAA) 979 1108 IPR003959 GO:0005524|GO:0016887
Trre1g04581 1243 MobiDBLite consensus disorder prediction 539 562 - -
Trre1g04581 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 938 1217 IPR027417 -
Trre1g04581 1243 SUPERFAMILY SMAD/FHA domain 113 206 IPR008984 GO:0005515
Trre1g04581 1243 Coils Coil 378 398 - -
Trre1g04581 1243 Pfam AAA+ lid domain 1132 1167 IPR041569 -
Trre1g04581 1243 Gene3D - 112 221 - -
Trre1g04581 1243 Gene3D - 937 1217 IPR027417 -
Trre1g04581 1243 MobiDBLite consensus disorder prediction 308 336 - -
Trre1g04581 1243 Gene3D - 1111 1205 - -
Trre1g04581 1243 MobiDBLite consensus disorder prediction 1 43 - -
Trre1g04581 1243 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 937 1113 - -
Trre1g04581 1243 ProSitePatterns AAA-protein family signature. 1082 1101 IPR003960 GO:0005524|GO:0016887
Trre1g04581 1243 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 423 1242 - -
Trre1g04581 1243 MobiDBLite consensus disorder prediction 310 324 - -
Trre1g04581 1243 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04581 Trre-Chr1 51868496 51887364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04581 938 1170 Calmodulin-binding Proteins AT3G56690 41.350 4.25e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04581 - - gmx:100801477 1727.99