Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04576 ATGTCTTCCTTAGATTCAACTTGGATCACATCCTTTTCATGTTCACCTTCATCAGGTGATGTTGCTGCATATGCATTACCTCAATGGTTGAGATTCATTTTCCTCTCACCATGTCCTCAAAGAGCTTTTCTTTCAGCCGTTGATGTTTTACTCTTGTTTACTCTATTAGTCTTTGCTATCATAAAGCTCTATTCAAGGTTCACTAATTCCAATGGAAACAATAATACAGATGAAATTAATAAACCTCTTATCAGTAACATAAGGTCTTTAAGAACAAGAACAACTCTATGGTTCAAGCTAACTCTAATTGCAACGATTTTTGTATCGATGTTATACACGGTCGCTTGCATTTTAGTATTTAGCAGTTCAAATATTGAATTATCATGGAAAACACTTGATGGACTATTTTGGGTTGTTCAAGCAATAACTCAATTAGTCCTTGTTATTTTAATCATCCATGTTAAAAGATTTGAAGCTGTTGTTTACCCTTTATCGCTTCGAATTTATTGGTTTGCGAGTTTCGTTGTTGTTTCTTTGTTCACTGCTTCTGGTGTTATACGTTTGGTCTCTTTGGAGGGAGAAAATTACTTCTTTAGTTTTATGGTAGATGATGTCGTGTCTTTCATTTCGCTACCTTTTTCGCTTTTTTTGCTTTGTGTTGGTGTTAAAGGTTCTACCGGTGTTATTAAGGCAAGAGAAGCATCCGAATTGGTTAATGGTAATGATGAAGAAACAAAACTAAATGGTTATGATGATCATGGTTTGAATAAACCAAGTGTTACTACTGGTTTTGCCACAGCTTCTCAATTTTCTAAGACTTTTTGGATTTGGTTAAATCCTTTGTTGAGTAAAGGGTATGAGTCACCGCTTAATATCGATGATGTTCCATACGTTTCTCCACAACATAGAGCTGAGAGGATGTGTGCTATCTTTGAATCAAAATGGCCTAAATCGGATGAGAGATCAAAGCATCCGGTTAGAACCACGTTGATTCGGTGTTTCTGGAAAGATGTAATCTTCACCGCTTTTCTTGCTATTATTAGGCTATCTGTTATGTTTGTTGGACCTGTTTTAATTCAAGACTTTGTTGATTTCACTTCTGGAAAAGGTAGTTCTCCGTACGAAGGTTACTATCTCGTGCTGATTCTTCTTGTAGCCAAGTTTATTGAAGTTTTAACAACTCATCATTTCAACTTCAACTCTCAGAAACTTGGTATGCTTATAAGATGCACTCTCATTACTTCTTTGTATAAAAAGGGTTTGAGGCTATCTGGTTCTGCAAGACAGGATCATGGTGTTGGTTCTATTGTGAATTACATGGCTGTTGATACTCAACAATTATCCGATATGATGCTTCAGTTACATGCTATCTGGATGATGCCGTTTCAAGTTGGTATTAGTTTGTTTTTGCTTTACAATTGTCTCGGCGCTTCTGCAGTTACCGCGCTTCTTTGCCTTGTTCTTGTTATCGTGTTTATCGTGGTGACAACTCGACAGAACAAAGGCTACCAGTTTCAAGCTATGATAAGCCGTGATTCGAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGCGTGATCAAGTTTCAGGCATGGGAAGATCATTTCAACAATAGAATCTTGAATTTCCGCAAGGCGGAGTTTGGGTGGCTTTCGAAGTTTATGTACTCAATTTGTGGAAACATTATTGTGTTGTGGAGTGCTCCTATGTTGATATCAACACTCACTTTCGGTACCGCACTTTTGCTTGGAGTTCCACTTGATGCAGGAACTGTTTTCACTACAACAACCATCTTTAAGATCCTGCAGGAACCTATTAGGACTTTTCCTCAGTCTATGATAGCTCTTTCACAAGCATTGGTATCACTTGGGAGATTAGATAGGTACATGTCTAGCAGGGAACTGAGGGATGATTCAGTTGAGAGAAGTGAAGGGTGTGATGGAGTAACTGCTGTTGATGTTCAAGATGGTACCTTTACTTGGGATGATGATGGCCTAGAACAAGACTTGAAAAATATTAATTTGAAGGTTAATAAGGGAGAGCTCACAGCTATTGTTGGTACTGTTGGCTCTGGAAAGTCTTCTCTTCTTGCATCAATTCTCGGTGAAATGCACAAAACTTCTGGAAAGGTTCAAGTTTGCGGGAGTATTGCTTACGTTGCACAAACGTCTTGGATTCAAAACGGGACAATTGAAGAAAACATTCTGTTTGGTTTACCGATGAACAGACAAAAGTACAATGAAGTTATCAGGGTTTGTTGCTTGGAGAAAGACTTAGAGATGATGGAATTTGGGGATCAGACAGAGATCGGAGAGCGCGGCATCAACCTCAGTGGAGGTCAGAAGCAGCGTATACAACTTGCTAGGGCTGTATATCAAGACTGTGATATATATCTTCTTGATGATGTCTTCAGTGCAGTCGATGCACATACCGGCACTGAAATATTTAAGGAATGCGTGAGGGGAGCTTTGAAAGGCAAGACCATTGTTCTTGTAACACACCAAGTAGACTTCCTACATAATGTGGATCGTATTGTGGTGATGAGGGAAGGAATGATAGTTCAATCGGGCCGGTACAACGACTTACTTGATTCTGGATTGGATTTTGGTATTCTAGTAGCTGCACATGAGACATCTATGGAACTAGTAGAACAAGGCGCAGCCGTTCCTGGTGAAAATTCAAACAAACCGATGATATCTAAGTCAGCGTCTAATAACAGTAGAGAAGCCAATGGTGAAAGTAATTCTCTTGACCAGCCTAAATCTGATAAGGGAAGTTCTAAACTTGTCAAAGAAGAGGAAAGAGAAACTGGGAAAGTTAGCTTTAATATCTATAAACTATACTGCACCGAGGCTTTTGGATGGCTCGGCATTTCATCAGTACTCTTTCTTTCATTTCTGTGGCAAGCATCTATGATGGCTAGTGATTATTGGTTGGCATATGAAACCTCGGTTGAGCGCGCTGAATTTTTCAATCCTTCTTTGTTTATTTCCGTCTATGCAATTATCACCATACTTTCAGTTTTACTGATAGTGCTGAGGTCCTATTCTGTAACAATCTTTGGATTAAAGACAGCACAGATTTTCTTCAATCAAATTCTTAATAGCATCTTGCATGCTCCAATGTCATTCTACGACACTACTCCATCAGGGAGGATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATATCTTCATCCCTTTGTTTATCAATTTTGTGGTGGCAATGTATATCACAGTGATCAGTATCTTCGTAGTCACATGCCAGAATTCATGGCCAACAGCTTTCTTGTTGGTTCCTCTTGTTTGGTTGAACATTTGGTATCGGGGTTATTTTCTTTCTACATCTCGTGAATTAACACGTCTGGATTCAATTACAAAAGCACCTGTGATTGTTCATTTCTCCGAAAGCATTTCCGGTGTCATGACAATTCGCGCATTCAGAAAGCAGAAGGAATTTAGTTTAGAAAACATTAAACGAGTGAATTCTAATTTGCGAATGGATTTTCACAACTTCAGTTCCAATGCGTGGTTAGGTTTCCGCTTAGAATTGCTTGGAAGCTTAATTTTCTGCATTTCTGCTTTGTTCATGGTCACATTACCGAGCAATATCATAAAGCCAGAAAATGTTGGTTTGTCTCTTTCTTATGGATTGTCGTTGAATTCGGTGCTGTTTTGGGCTATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCAGTTGAAAGGATAAAACAGTTCTCAAATATTCCATCAGAAGCAGCATGGATTGTTAAGGATCGTTCACCTCCTCCAAATTGGCCCGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTCAGATATCGTCCAAACACTCCTTTGGTTCTTAAAGGAATTACTCTAAGCATTAACGGAGGAGAAAAGGTTGGCGTTGTTGGTCGAACGGGGAGTGGAAAATCTACTTTGATTCAAGTTTTCTTCAGACTAGTGGAACCAACTGGAGGGAAAATAATCATTGATGGCATTGACATATGTGCCTTAGGACTTCATGATCTTAGATCTCGATTCGGTATCATCCCTCAGGAGCCTGTCCTTTTCGAAGGAACTGTTAGAAGTAACATTGATCCAACTGGACAGTATACAGATGATGATATATGGAAGAGTTTGGATCGTTGTCAACTGAAAGACGCAGTGGCTTCGAAGCCTGAGAAACTTGACTCATTAGTGGTTGACAATGGAGATAACTGGAGTGTGGGACAAAGGCAGTTGCTTTGTTTAGGGAGAGTTATGCTTAAGCAAAGCAGGCTGTTATTTATGGACGAAGCTACTGCTTCTGTCGATTCTCAAACCGATGCTGTAATTCAGAAGATCATTAGAGAGGATTTTGCGGCACGTACCATCATCAGTATTGCTCATAGGATACCAACAGTCATGGACTGCGATCGAGTGTTAGTTGTAGATGCAGGACGCGCGAAAGAATTTGACAAACCTTCAAATTTGCTCCAAAGGCAATCGCTGTTTGCAGCTTTGGTTCAAGAGTATGCCAACCGTTCTGCCGGACTATAA 4557 0.3952 MSSLDSTWITSFSCSPSSGDVAAYALPQWLRFIFLSPCPQRAFLSAVDVLLLFTLLVFAIIKLYSRFTNSNGNNNTDEINKPLISNIRSLRTRTTLWFKLTLIATIFVSMLYTVACILVFSSSNIELSWKTLDGLFWVVQAITQLVLVILIIHVKRFEAVVYPLSLRIYWFASFVVVSLFTASGVIRLVSLEGENYFFSFMVDDVVSFISLPFSLFLLCVGVKGSTGVIKAREASELVNGNDEETKLNGYDDHGLNKPSVTTGFATASQFSKTFWIWLNPLLSKGYESPLNIDDVPYVSPQHRAERMCAIFESKWPKSDERSKHPVRTTLIRCFWKDVIFTAFLAIIRLSVMFVGPVLIQDFVDFTSGKGSSPYEGYYLVLILLVAKFIEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSGSARQDHGVGSIVNYMAVDTQQLSDMMLQLHAIWMMPFQVGISLFLLYNCLGASAVTALLCLVLVIVFIVVTTRQNKGYQFQAMISRDSRMKAVNEMLNYMRVIKFQAWEDHFNNRILNFRKAEFGWLSKFMYSICGNIIVLWSAPMLISTLTFGTALLLGVPLDAGTVFTTTTIFKILQEPIRTFPQSMIALSQALVSLGRLDRYMSSRELRDDSVERSEGCDGVTAVDVQDGTFTWDDDGLEQDLKNINLKVNKGELTAIVGTVGSGKSSLLASILGEMHKTSGKVQVCGSIAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVIRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNVDRIVVMREGMIVQSGRYNDLLDSGLDFGILVAAHETSMELVEQGAAVPGENSNKPMISKSASNNSREANGESNSLDQPKSDKGSSKLVKEEERETGKVSFNIYKLYCTEAFGWLGISSVLFLSFLWQASMMASDYWLAYETSVERAEFFNPSLFISVYAIITILSVLLIVLRSYSVTIFGLKTAQIFFNQILNSILHAPMSFYDTTPSGRILSRASTDQTNVDIFIPLFINFVVAMYITVISIFVVTCQNSWPTAFLLVPLVWLNIWYRGYFLSTSRELTRLDSITKAPVIVHFSESISGVMTIRAFRKQKEFSLENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSLIFCISALFMVTLPSNIIKPENVGLSLSYGLSLNSVLFWAIYMSCFIENKMVSVERIKQFSNIPSEAAWIVKDRSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDICALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDDIWKSLDRCQLKDAVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRQSLFAALVQEYANRSAGL 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04576 1518 CDD ABCC_MRP_domain1 653 852 - -
Trre1g04576 1518 Pfam ABC transporter 671 804 IPR003439 GO:0005524
Trre1g04576 1518 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 265 1511 - -
Trre1g04576 1518 SMART AAA_5 680 858 IPR003593 GO:0016887
Trre1g04576 1518 SMART AAA_5 1302 1486 IPR003593 GO:0016887
Trre1g04576 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 962 1239 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04576 1518 CDD ABC_6TM_ABCC_D2 962 1251 IPR044726 GO:0140359
Trre1g04576 1518 MobiDBLite consensus disorder prediction 896 924 - -
Trre1g04576 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1266 1509 IPR027417 -
Trre1g04576 1518 FunFam ABC transporter C family member 4 636 895 - -
Trre1g04576 1518 CDD ABC_6TM_ABCC_D1 340 627 IPR044746 GO:0140359
Trre1g04576 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1276 1510 IPR003439 GO:0005524
Trre1g04576 1518 Pfam ABC transporter 1293 1441 IPR003439 GO:0005524
Trre1g04576 1518 ProSitePatterns ABC transporters family signature. 778 792 IPR017871 GO:0005524|GO:0016887
Trre1g04576 1518 Gene3D ABC transporter type 1, transmembrane domain 326 631 IPR036640 GO:0005524|GO:0016020
Trre1g04576 1518 Gene3D ABC transporter type 1, transmembrane domain 922 1257 IPR036640 GO:0005524|GO:0016020
Trre1g04576 1518 SUPERFAMILY ABC transporter transmembrane region 952 1256 IPR036640 GO:0005524|GO:0016020
Trre1g04576 1518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 652 867 IPR027417 -
Trre1g04576 1518 CDD ABCC_MRP_domain2 1274 1494 - -
Trre1g04576 1518 Pfam ABC transporter transmembrane region 963 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04576 1518 Pfam ABC transporter transmembrane region 338 606 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04576 1518 Gene3D - 632 890 IPR027417 -
Trre1g04576 1518 FunFam ABC transporter C family member 5 922 1257 - -
Trre1g04576 1518 SUPERFAMILY ABC transporter transmembrane region 330 632 IPR036640 GO:0005524|GO:0016020
Trre1g04576 1518 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 339 619 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre1g04576 1518 MobiDBLite consensus disorder prediction 888 933 - -
Trre1g04576 1518 FunFam ABC transporter C family member 3 1259 1510 - -
Trre1g04576 1518 FunFam ABC transporter C family member 10 322 635 - -
Trre1g04576 1518 Gene3D - 1259 1510 IPR027417 -
Trre1g04576 1518 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 653 876 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04576 Trre-Chr1 51825020 51830696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04576 1274 1516 Calmodulin-binding Proteins AT2G36910 30.800 6.27e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04576 - K05666 gmx:100793361 2469.11