Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04574 ATGAAGTTCTGCAAGACGTATCAGAAGTACATGCGAGATCAAGAGCATAACAAGGTCCCAGTCGTTGGATTCAAGAACCTCAAAAAGATCATCAAAAAATGTAGACGATCTTCTCAATTGCACAAAACCTGCCCCGATAAATGCCCAGTGTGTGATGGGACCTTTTTCCCTTCTCTTCTGAATGAAATGTCAGAAATAGTGGGATGTTTTAATCAGCGTGCACAGAAATTACTGGAAAAACATCTAGCTTCTGGATTCAGAAAGTACATTCTCATGCTGAAAGGAAAATCAAAAGGGAATCATACTACTTTAATTCTTGAAGGAAAAGAATTAGTTACCTATGCACTGATAAACGCTCTTGCAATTCGCAAAATACTAAAGAAATATGATAAGATTCATTACTCCAAGCAAGGGCAATTATTCAAGTCACAAGCCCAGATTATGCACAAGGAAATTCTTCAGAGTCCTTGGCTTATTGAGCTTATGGCATTCCATATCAACTTACGGGAAACTAATGTCAACTCAAAGAAGGCACCTGCATTATCCGATGGATGTGATGGGAAGGTACCTGCATTACTCGATGGATGTGATACGAAGGCACCTGCATTATTCGATGGATGTGATACGAAGGCACCTGCATTATTCGATGGATGCGATACGAAGGCACCTGCATTATTCAATGGATGTGATGTCGTAACTCAGGATGGAAAAACCTCACTTGCTTGTGAGCTCTCTGATGACATCAATTATAAGTTCGTTGGTTCTATCAAAATAGACATCGACTTGACATGCTCTATATGCTTGGACACGGTGTTTGATCCAGTTTCTCTAACTTGTGGCCACATATTCTGCTACAGTTGTGCTTGCTCAGCTGCATCTGTTAGTATTGTTGATGGACTTAAGGCAGCACATTCGAAAGAGAAATGTCCTCTATGCCGAGAGGCAAGGGTTTACGAAGGTGCTGTGCATATGGAAGAATTAAATATTCTGTTAGGACGAAGATTGAAGAAGTATTGGGAGGAAAGGCTTCAGATGGAAAGGGTGGAGAGGGTCAAGCAAGCAAAAGAGCACTGGGAAACACAGTGTAGCGCGTTCATGGGCATCTAA 1107 0.4128 MKFCKTYQKYMRDQEHNKVPVVGFKNLKKIIKKCRRSSQLHKTCPDKCPVCDGTFFPSLLNEMSEIVGCFNQRAQKLLEKHLASGFRKYILMLKGKSKGNHTTLILEGKELVTYALINALAIRKILKKYDKIHYSKQGQLFKSQAQIMHKEILQSPWLIELMAFHINLRETNVNSKKAPALSDGCDGKVPALLDGCDTKAPALFDGCDTKAPALFDGCDTKAPALFNGCDVVTQDGKTSLACELSDDINYKFVGSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVSIVDGLKAAHSKEKCPLCREARVYEGAVHMEELNILLGRRLKKYWEERLQMERVERVKQAKEHWETQCSAFMGI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04574 368 CDD RING-HC_BAH1-like 255 327 - -
Trre1g04574 368 ProSiteProfiles SPX domain profile. 1 143 IPR004331 -
Trre1g04574 368 SMART ring_2 264 312 IPR001841 -
Trre1g04574 368 ProSiteProfiles Zinc finger RING-type profile. 264 313 IPR001841 -
Trre1g04574 368 Pfam Zinc finger, C3HC4 type (RING finger) 261 314 - -
Trre1g04574 368 SUPERFAMILY RING/U-box 257 316 - -
Trre1g04574 368 ProSitePatterns Zinc finger RING-type signature. 279 288 IPR017907 -
Trre1g04574 368 CDD SPX_BAH1-like 2 139 - -
Trre1g04574 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 366 IPR013083 -
Trre1g04574 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 177 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04574 Trre-Chr1 51817865 51820492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04574 227 355 C3H Transcription Factor Family AT2G42030 31.008 6.38e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04574 K16275 - gmx:100803060 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04574 1 51817865 51820492 Trre1g04574 1 51817865 51820492 ECH
Trre1g04574 1 51817865 51820492 Trre13g04732 13 54200446 54202944 PCT