Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04559 ATGGTCAGAAGAAAATCACACCTTACTTTACTGGTTGCATTTATTTTTCTTTCATACCTGGCAAACACTAGCCAATTGGTATTTGCAGAAGAGAAAAACAATGTCAGGGAAGCTTGCAAAGTAACTAGGTATCAAAACCTTTGCATGCGCTCGCTAGCACCGTTCTCTAACAGTGCTGGAAGAAGCCCCAGCAAGTGGGCAAGGGCAGGAGTTTCGGTTACAATCGGCGAGGTTGAGCATGTTCAAACATATCTGGCAAACTTAAAGAGGCATGGACATTTAAGAGGAAGAAACAAAGTTGCACTTTTAGATTGTGTTGAGACTTTTGCAGATGCCCTTGATGAGCTTCATAGGTCACTGAATGTGCTCAGAAGACTTAGCAGAAGCACGTTTGGTACACAAATGGGGGACCTTAATTCATGGATAAGTGCAGCACTCACAAATGAAGATACTTGCCTCGATGGGTTTCAAGGCGAAAATGGTAGGAAAATTAAATTGCTGCGAAATAAGGTTCAACAAGTATGTTATATAACCAGTAACGCTCTAGCTCTCGTCAACAAACTTGCAACTACAGGACTAGGGAGCATTTCTGATCCATAG 600 0.4217 MVRRKSHLTLLVAFIFLSYLANTSQLVFAEEKNNVREACKVTRYQNLCMRSLAPFSNSAGRSPSKWARAGVSVTIGEVEHVQTYLANLKRHGHLRGRNKVALLDCVETFADALDELHRSLNVLRRLSRSTFGTQMGDLNSWISAALTNEDTCLDGFQGENGRKIKLLRNKVQQVCYITSNALALVNKLATTGLGSISDP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04559 199 SMART PMEI_2 30 184 IPR006501 GO:0004857
Trre1g04559 199 NCBIfam pectinesterase inhibitor domain 6 188 IPR006501 GO:0004857
Trre1g04559 199 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857
Trre1g04559 199 FunFam Pectinesterase inhibitor 3 30 189 - -
Trre1g04559 199 CDD PMEI-like_3 38 190 - -
Trre1g04559 199 PANTHER PECTINESTERASE INHIBITOR-LIKE 10 184 - -
Trre1g04559 199 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 190 IPR035513 -
Trre1g04559 199 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 188 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04559 Trre-Chr1 51661329 51661928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04559 35 193 Carbohydrate Esterase AT3G14310 35.758 4.36e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04559 - - gmx:100791264 252.677