Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04553 ATGAGCGGAACGAAGGGGAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCGCGAAGCCAGTTGAAGACAAGATTATGGACATTGCTTCCCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCCCTTGGTGATTCCGTCACCGTTACACGTGAGAAGAGCAAAATCACCGTTACCTCCGATAGCAATTTCTCCAAAAGGTATCTGAAGTACTTAACCAAGAAGTACTTGAAAAAGCACAATGTAAGGGATTGGCTTCGTGTTATTGCTTCCAACAAGGACCGCAATGTCTATGAGTTGAGATACTTCAACATTGCTGAGAATGAGGGTGAAGAGGAAGACTGA 360 0.4472 MSGTKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04553 119 Gene3D - 1 119 IPR038526 -
Trre1g04553 119 PANTHER 60S RIBOSOMAL PROTEIN L22 4 119 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre1g04553 119 FunFam 60S ribosomal protein L22-2 1 119 - -
Trre1g04553 119 Pfam Ribosomal L22e protein family 9 117 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04553 Trre-Chr1 51602763 51604155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04553 4 119 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 89.655 8.10e-65 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04553 K02891 - pop:7455994 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04553 1 51602763 51604155 Trre1g04553 1 51602763 51604155 ECH
Trre1g04144 1 46618863 46620018 Trre1g04553 1 51602763 51604155 ECH