Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04552 ATGGTTGGGTATTTGTCCAGTATACTGGGGTATGCTGAGAAATGTGAAAGCTACTTGATTTTTAGTGGAGAAACTGCTCTTGGGAATAGTGTTAGGATATTTTTGTATTTTCTTGGTCTTGCCTATTGTTTCATTGGGTTATCGGCTATAACGGCCCGATTCTTTCAATCTATGGAAAATGTGGTGAAACATACAAGGGAGGTAGTGGTGATAGATCCTGTTACTAAAGCTGAAATTATTACACATGAAAAAGTTTGGAATTATACAATTGCAGATATTAGTTTGTTGGCCTTTGGAACCAGTTTTCCTCAGATATCGTTAGCTACTATTGATGCTATACGAAATATAGGGAATCTCTATGCTGGAGGTTTGGGACCTGGAACACTCGTTGGTTCTGCTGCGTTTGACCTCTTCCCCATCCACGCTGTTTGTGTAGTAATTCCAAAAGCTGGAGAGTTGAAAAAGATTGCTGATCTAGGAGTATGGATAGTGGAGTTATTTTGGTCATTTTGGGCTTATTTTTGGTTATACATAATTTTGGAGGTATGGACTCCAAACGTAATAACTTTGTCGGAGGCCTTGTTGACAGTACTTCAGTATGGATTACTGTTGATTCATGCTTATGCTCAAGACAAACGTTGGCCCTATATTTCTCTACCTATTGCAAGAGATGAGAGGCCAGAAGATTGGGTGCCGGAAGAGACTCCTAGAAAAAAGTCCTTTGAGACAGTGGAGTGCTCTGAGATAACTCATTTTAATGAAGAGAACAGGGACACTGTTGATATTTTTTCCATTCATTCAGAAAACTCAAGAGATACATACGTAAGAGTACCGCAAATAGATGATGCAGAAAATTCTGGCAAATTTATGGAAACAGAGCTTGAGGATACCTGTTTGCTTACTATTTGGAGACAGCAATTTGTTGATGCACTGACGGTGGAGAGCCGAAAATCTAAAAAGATTGACAATATCTATATCCGCATAGCTAAAATTTTCTGGCAGTTGTTGCTTTTACCATGGAGATTTTTGTTTGCTTTTGTTCCTCCATGCCATATTGCTCATGGCTGGATTTCTTTTATTTGCTCTCTGCTTTTCATCAGTGGGATAGCTTACATTGTGACTAAGATAACGGATCTTATAAGTTGTGTCACAGGAATAAATGCCTACGTCATAGCATTTACGGCACTAGCCAGTGGAACCTCATGGCCTGATTTAGTGGCAAGCAAGATTGCTGCTGAACGTCAAAAAACAGCAGACTCTGCAATTGCAAACATCACTTGCAGTAATTCTGTGAATATATATGTCGGCATTGGTGTTCCATGGCTTATAGATACTTTGTACAATTTCATAGCATATAGAGAACCTCTTCGAATTGAAAATGCAGGGGGACTTAGCTTTTCATTGATTGTTTTCTTTGCCACTTCCGTTGGATGTATATCAGTTTTGGTTCTTAGGCGTATAGTTTTTGGCGCAGAGCTTGGAGGACCAAGGCTTTGGGCATGGATTACCTGCGCATTTTTCATGCTGCTCTGGATTATTTTTGTTGTACTGTCTTCACTTAAGGTTTCTGGATTCATTTAG 1581 0.3941 MVGYLSSILGYAEKCESYLIFSGETALGNSVRIFLYFLGLAYCFIGLSAITARFFQSMENVVKHTREVVVIDPVTKAEIITHEKVWNYTIADISLLAFGTSFPQISLATIDAIRNIGNLYAGGLGPGTLVGSAAFDLFPIHAVCVVIPKAGELKKIADLGVWIVELFWSFWAYFWLYIILEVWTPNVITLSEALLTVLQYGLLLIHAYAQDKRWPYISLPIARDERPEDWVPEETPRKKSFETVECSEITHFNEENRDTVDIFSIHSENSRDTYVRVPQIDDAENSGKFMETELEDTCLLTIWRQQFVDALTVESRKSKKIDNIYIRIAKIFWQLLLLPWRFLFAFVPPCHIAHGWISFICSLLFISGIAYIVTKITDLISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQKTADSAIANITCSNSVNIYVGIGVPWLIDTLYNFIAYREPLRIENAGGLSFSLIVFFATSVGCISVLVLRRIVFGAELGGPRLWAWITCAFFMLLWIIFVVLSSLKVSGFI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04552 526 Pfam Sodium/calcium exchanger protein 36 208 IPR004837 GO:0016020|GO:0055085
Trre1g04552 526 Pfam Sodium/calcium exchanger protein 355 518 IPR004837 GO:0016020|GO:0055085
Trre1g04552 526 PANTHER SODIUM/CALCIUM EXCHANGER 14 293 - -
Trre1g04552 526 Gene3D - 307 520 IPR044880 -
Trre1g04552 526 Gene3D - 88 223 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04552 Trre-Chr1 51589965 51595100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04552 6 526 Antiporters AT2G47600 72.106 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04552 K03452 K05849 gmx:100792839 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04552 1 51589965 51595100 Trre1g04552 1 51589965 51595100 ECH