Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04551 ATGGTTGGGTATTTGTCCAGTATACTGGGGTATGCTGAGAAATGTGAAAGCTACTTGATTTTTAGTGGAGAAACTGCTCTTGGGAATAGTGTTAGGATATTTTTGTATTTTCTTGGTCTTGCCTATTGTTTCATTGGGTTATCGGCTATAACGGCCCGATTCTTTCAATCTATGGAAAATGTGGTGAAACATACAAGGGAGGTAGTGGTGATAGATCCTGTTACTAAAGCTGAAATTATTACACATGAAAAAGTTTGGAATTATACAATTGCAGATATTAGTTTGTTGGCCTTTGGAACCAGTTTTCCTCAGATATCGTTAGCTACTATTGATGCTATACGAAATATAGGGAATCTCTATGCTGGAGGTTTGGGACCTGGAACACTCGTTGGTTCTGCTGCGTTTGACCTCTTCCCCATCCACGCTGTTTGTGTAGTAATTCCAAAAGCTGGAGAGTTGAAAAAGATTGCTGATCTAGGAGTATGGACTCCAAACGTAATAACTTTGTCGGAGGCCTTGTTGACAGTACTTCAGTATGGATTACTGTTGATTCATGCTTATGCTCAAGACAAACGTTGGCCCTATATTTCTCTACCTATTGCAAGAGATGAGAGGCCAGAAGATTGGGTGCCGGAAGAGACTCCTAGAAAAAAGTCCTTTGAGACAGTGGAGTGCTCTGAGATAACTCATTTTAATGAAGAGAACAGGGACACTGTTGATATTTTTTCCATTCATTCAGAAAACTCAAGAGATACATACGTAAGAGTACCGCAAATAGATGATGCAGAAAATTCTGGCAAATTTATGGAAACAGAGCTTGAGGATACCTGTTTGCTTACTATTTGGAGACAGCAATTTGTTGATGCACTGACGGTGGAGAGCCGAAAATCTAAAAAGATTGACAATATCTATATCCGCATAGCTAAAATTTTCTGGCAGTTGTTGCTTTTACCATGGAGATTTTTGTTTGCTTTTGTTCCTCCATGCCATATTGCTCATGGCTGGATTTCTTTTATTTGCTCTCTGCTTTTCATCAGTGGGATAGCTTACATTGTGACTAAGATAACGGATCTTATAAGTTGTGTCACAGGAATAAATGCCTACGTCATAGCATTTACGGCACTAGCCAGTGGAACCTCATGGCCTGATTTAGTGGCAAGCAAGATTGCTGCTGAACGTCAAAAAACAGCAGACTCTGCAATTGCAAACATCACTTGCAGTAATTCTGTGAATATATATGTCGGCATTGGTGTTCCATGGCTTATAGATACTTTGTACAATTTCATAGCATATAGAGAACCTCTTCGAATTGAAAATGCAGGGGGACTTAGCTTTTCATTGATTGTTTTCTTTGCCACTTCCGTTGGATGTATATCAGTTTTGGTTCTTAGGCGTATAGTTTTTGGCGCAGAGCTTGGAGGACCAAGGCTTTGGGCATGGATTACCTGCGCATTTTTCATGCTGCTCTGGATTATTTTTGTTGTACTGTCTTCACTTAAGGTTTCTGGATTCATTTAG 1518 0.3972 MVGYLSSILGYAEKCESYLIFSGETALGNSVRIFLYFLGLAYCFIGLSAITARFFQSMENVVKHTREVVVIDPVTKAEIITHEKVWNYTIADISLLAFGTSFPQISLATIDAIRNIGNLYAGGLGPGTLVGSAAFDLFPIHAVCVVIPKAGELKKIADLGVWTPNVITLSEALLTVLQYGLLLIHAYAQDKRWPYISLPIARDERPEDWVPEETPRKKSFETVECSEITHFNEENRDTVDIFSIHSENSRDTYVRVPQIDDAENSGKFMETELEDTCLLTIWRQQFVDALTVESRKSKKIDNIYIRIAKIFWQLLLLPWRFLFAFVPPCHIAHGWISFICSLLFISGIAYIVTKITDLISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQKTADSAIANITCSNSVNIYVGIGVPWLIDTLYNFIAYREPLRIENAGGLSFSLIVFFATSVGCISVLVLRRIVFGAELGGPRLWAWITCAFFMLLWIIFVVLSSLKVSGFI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04551 505 PANTHER SODIUM/CALCIUM EXCHANGER 282 505 - -
Trre1g04551 505 Pfam Sodium/calcium exchanger protein 334 497 IPR004837 GO:0016020|GO:0055085
Trre1g04551 505 Pfam Sodium/calcium exchanger protein 36 180 IPR004837 GO:0016020|GO:0055085
Trre1g04551 505 Gene3D - 88 201 IPR044880 -
Trre1g04551 505 Gene3D - 286 499 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04551 Trre-Chr1 51589965 51595100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04551 6 505 Antiporters AT2G47600 68.691 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04551 K03452 K05849 gmx:100792839 832.017