Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04549 ATGCCAAGTGTTAAACCAAATCCATCAGACAAAGACTCGGAACCATTCGTCGAAACTGATCCAACCGGACATTACAGCCGATACAACGAACTCCTAGGATCAAGTGCTTGTAAGAAAGTATACAAAGCATTTGATCAAGAAGAAGGAATAGAAGTCAAGATTGGTGACTTAGGTTTGGCAGCAATTGTTGGAAAGAACCATTCAACACATTCAATTCTAGGGACACCAGAATTTATGGCACCAAAATTATATGAAGAGAATTACACTAAAATGGTGGACATATACTCATTTGGGATGTTAGTATTAGAGATGGTGACACTGGAGATTCCTTATAGTGAATCTGACAATGTTGCAAACATATACAAAAAGGTATCTTCAGGTGTGAGACCTAAATCATTGAACAAGGTTAAAGATGCTGAAGTGGAGGATTTCATTGAAAAATGTCTTGCTCAACTAAGGGCTAGACCTTCTGCTCAAGAATTGCTTAAAGATCATTTCTTTGGTGTTTTAGATGACGATGATGATGATAATGGCTCAGTTATTTTGTAA 549 0.3716 MPSVKPNPSDKDSEPFVETDPTGHYSRYNELLGSSACKKVYKAFDQEEGIEVKIGDLGLAAIVGKNHSTHSILGTPEFMAPKLYEENYTKMVDIYSFGMLVLEMVTLEIPYSESDNVANIYKKVSSGVRPKSLNKVKDAEVEDFIEKCLAQLRARPSAQELLKDHFFGVLDDDDDDNGSVIL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04549 182 MobiDBLite consensus disorder prediction 1 21 - -
Trre1g04549 182 Pfam Protein kinase domain 51 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04549 182 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 52 - -
Trre1g04549 182 SMART serkin_6 26 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04549 182 ProSiteProfiles Protein kinase domain profile. 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g04549 182 SUPERFAMILY Protein kinase-like (PK-like) 50 167 IPR011009 -
Trre1g04549 182 Gene3D Transferase(Phosphotransferase) domain 1 31 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04549 Trre-Chr1 51577508 51579035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04549 10 59 MAP Kinase Kinase Kinase AT5G55560 72.000 2.85e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre1g04549 Pkinase 3.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04549 K08867 - gmx:100818126 200.675