Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04537 ATGGCTCTCAAAGACAAAAGCATTTCCTATTTATTATCAATCTTGTTGTTTCTATTAATGTGTGTGGTAAATGGTGTTCCACGAGAAACAATTTGCAAGTTTACCGTAGACCCTACTTATTGTAAAACCGTACTTGCCAATCAAAATGGAAACATCTATGACTATGGTCACATTTCAATTCGAAAATCCTTATCCCAAACCAGTAAATTTATGAACTCAATGAACTCATATCTTCAAGGTAGCTCTTCTTTTTCTCAATCCACAATTCGCGCCCTTGAAGATTGTCGATTCCTTGCTGACCTAAATTTTGAATACTTATCATACACACATGCCACTACAAATCAATCTAATAATGTTCTTCCAACTTCTCAAGCTGAAGATTTCGAAACTTTTCTCAGTGCCGTTTTGACTAACCAACAAACGTGTTTGGATGGCCTTAATACTATAGCTTCTGATCAAATAGTGAAAAAGGACTTGTCGTCATCACTCTCTGATGATATAAAGCTTCATAGTGTCACTCTAGCCTTGTTTAAGAAGGGATGGATGCCTGCAAATAAAATAAGAACATCATGGCCACAAAATGGAACACATTTGAATTTCAAACATGGTCGTTTACCCTTAATGTCAAATAAAGCACGTGCAATTTATGATTCTTCTAGACACCATGGAAGAAAACTACTTCAAACGGTCACCAATGACGATAGTGTTGTGGTGAGTGATATCGTAGTTGTTAGGCAAGATGGAAGTGGAAATTTTACCACTATCAACGACGCAATAGCCGCTGCACCGAATAACACAGTTGCTAGTGATGGATACTATTTCATTTACATCACCGAAGGCGTGTATCAAGAGTATGTATCTATACCCAAAAACAAGAAGTACTTGATGATGGTCGGAGCAGGAATCAATCAAACAGTTATCACAGGCGATCACATTGTTGTTGATGGGTTCACTACATTCAATTCAGCAACATTTGCCGTGGTTGCTCAAGGGTTTGTGGCTGTAAACATAACATTTCGCAACACCGTTGGACCAGGAAAACACCAAGCAGTTGCAATGAGAAGTGGAGCAGATATGTCCACCTTTTATAGTTGCAGTTTTGAAGGGTATCAAGACACATTGTATACACATTCTTTAAGGCTGTTTTATAGAGAATGTGATATTTATGGAACTGTTGACTTTATATTTGGAAATGCTGCAGTTGTTTTGCAAAATTGTAACATTTATTCTCGCCTTCCTCTTAGTGGACAATTCAATTCCATCACAGCGCAAGGATGA 1278 0.3772 MALKDKSISYLLSILLFLLMCVVNGVPRETICKFTVDPTYCKTVLANQNGNIYDYGHISIRKSLSQTSKFMNSMNSYLQGSSSFSQSTIRALEDCRFLADLNFEYLSYTHATTNQSNNVLPTSQAEDFETFLSAVLTNQQTCLDGLNTIASDQIVKKDLSSSLSDDIKLHSVTLALFKKGWMPANKIRTSWPQNGTHLNFKHGRLPLMSNKARAIYDSSRHHGRKLLQTVTNDDSVVVSDIVVVRQDGSGNFTTINDAIAAAPNNTVASDGYYFIYITEGVYQEYVSIPKNKKYLMMVGAGINQTVITGDHIVVDGFTTFNSATFAVVAQGFVAVNITFRNTVGPGKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRLFYRECDIYGTVDFIFGNAAVVLQNCNIYSRLPLSGQFNSITAQG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04537 425 Gene3D - 201 425 IPR012334 -
Trre1g04537 425 Pfam Pectinesterase 242 425 IPR000070 GO:0030599|GO:0042545
Trre1g04537 425 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Trre1g04537 425 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 179 IPR035513 -
Trre1g04537 425 FunFam Pectinesterase 29 179 - -
Trre1g04537 425 FunFam Putative pectinesterase 57 237 425 - -
Trre1g04537 425 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Trre1g04537 425 PANTHER PECTINESTERASE 16 425 - -
Trre1g04537 425 Pfam Plant invertase/pectin methylesterase inhibitor 29 175 IPR006501 GO:0004857
Trre1g04537 425 SMART PMEI_2 22 176 IPR006501 GO:0004857
Trre1g04537 425 CDD PMEI-like_3 30 181 - -
Trre1g04537 425 SUPERFAMILY Pectin lyase-like 237 425 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04537 Trre-Chr1 51353635 51355248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04537 6 425 Carbohydrate Esterase AT1G02810 54.889 2.26e-158 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04537 K01051 - gmx:100813051 582.793