Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04536 ATGGCTCTCAAACAGAAAAACATTTCCAATCTACTTTCAATATTGTTGTTTCTATCCTTGAGTGTGGCAAATGGTATTCCACCTGAAACCATTTGTGGGTCTACTGTAGACCCTACTTATTGTAAAAATGTACTTGCCAATCAAAATGGCAACATTTATGATTATGGTCGCATTTCTATTCGAAAATCTTTATCCCAATCTCGGAAGTTCATGAATTCAATGGACTCATATCTTCAAGATAGCTCGTCTTTGTCTCAATCGACAATTCGTGCCCTTGAAGATTGTCGAATTCTTGCTGACCTAAGTTTTGAATATTTATCAAATACTTATGCCACGACAAATCAATCTAATAATGTTCTTCCATCTTCTCAAGCTGGAAATTTTGAAACTTTCCTCGGTGCCGTTTTGACTAACCAACAAACATGTTTGGATGGTTTAAACACTATAGCTTTAGATCAAAGAGTGAAAAACGACTTGTCATCATCACTCTCTGATGACATAAAGCTTCATAGTGTCACCCTAGCCTTGTTCAAGAAGGGTTGGGTGCACGAAAATAAAGTAAGAACATCATGGCCACAAAACGGAAGACATCTAAATTTCAAAAATGGTCGTTTACCATTGAAGATGTCAAATAAAGCACGTGCTATTTATGACTCAGCTAGACACCATGGAAGAAAGTTACTTCAAACAGTGGGTGGTGAAGATAGTGTTGTGGTGAGTGATATTGTAGTTGTTAGCCAAGATGGAAGTGGAAATTTTACTACTATCAACGACGCAATAGCAGCTGCACCGAATAACACAATTGCTAGTGATGGATACTTTTTCATTTTCATCAGCAAAGGAGTGTATCAAGAGTATGTATCTATACCCAAAAACAAAAAGTACTTGATGATGGTCGGAGAAGGAATCAATCAAACAGTTATCACAGGCGATCACAATGTTGTTGATGGTTTCACAACATTCAATTCAGCCACATTTGCTGTGGTTGCTCAAGGATTCGTGGCAGTTAACATAACGTTCCGCAACACCGCTGGACCAGCAAAACACCAAGCAGTTGCAATGAGAAGTGGAGCAGATATGTCCACCTTCTATAGTTGCAGTTTTGAAGGATATCAAGACACATTGTATACACATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTTATGGAACTGTTGACTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAATTGTAACATTTATCCTCGTCTTCCTCTTAGTGGACAATTCAATTCCATCACAGCGCAAGGACGAACTGATCCAAATCAAAATACCGGAACTTCTATACAAAATGCGACAATTAAAGCAGCAGATGATTTGGCTCCTAAAGTTGGAACTGTTCAGACATACCTAGGAAGACCATGGAAAGAATATTCTAGGACAGTTTTTATGCAATCCTCCATGGATAGTTTCATTAACCCAGCTGGTTGGCATGAATGGGATGGCAATTTTGCATTGAGCACTTTGTATTATGCAGAATACAATAATAGAGGAGCAGGTTCAAACACTGCGAATCGAGTTACATGGCCTGGTTATCATGTTATTGGTGCTAATGATGCAGCCAATTTCACAGTGGCTAACTTCTTGAATGGTGATAGTTGGATTCCTCAAATTGGTGTCCCATACTTGAGTGGATTGACATAG 1671 0.383 MALKQKNISNLLSILLFLSLSVANGIPPETICGSTVDPTYCKNVLANQNGNIYDYGRISIRKSLSQSRKFMNSMDSYLQDSSSLSQSTIRALEDCRILADLSFEYLSNTYATTNQSNNVLPSSQAGNFETFLGAVLTNQQTCLDGLNTIALDQRVKNDLSSSLSDDIKLHSVTLALFKKGWVHENKVRTSWPQNGRHLNFKNGRLPLKMSNKARAIYDSARHHGRKLLQTVGGEDSVVVSDIVVVSQDGSGNFTTINDAIAAAPNNTIASDGYFFIFISKGVYQEYVSIPKNKKYLMMVGEGINQTVITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPAKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSSMDSFINPAGWHEWDGNFALSTLYYAEYNNRGAGSNTANRVTWPGYHVIGANDAANFTVANFLNGDSWIPQIGVPYLSGLT 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04536 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Trre1g04536 556 Gene3D - 237 555 IPR012334 -
Trre1g04536 556 FunFam Pectinesterase 236 555 - -
Trre1g04536 556 SUPERFAMILY Pectin lyase-like 238 554 IPR011050 -
Trre1g04536 556 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Trre1g04536 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 179 IPR035513 -
Trre1g04536 556 FunFam Pectinesterase 29 179 - -
Trre1g04536 556 Pfam Pectinesterase 243 541 IPR000070 GO:0030599|GO:0042545
Trre1g04536 556 SMART PMEI_2 23 176 IPR006501 GO:0004857
Trre1g04536 556 Pfam Plant invertase/pectin methylesterase inhibitor 29 175 IPR006501 GO:0004857
Trre1g04536 556 PANTHER PECTINESTERASE 23 545 - -
Trre1g04536 556 CDD PMEI-like_3 30 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04536 Trre-Chr1 51344658 51346437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04536 8 555 Carbohydrate Esterase AT1G02810 58.916 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04536 K01051 - gmx:100786124 845.114