Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04534 ATGGCTTTCAATAACAAAACCATTCTACTTTCCATCTTGTTCTTTCTAATATCATTGTGTGTAGCAAATGGTGTTCCACCTGAAACCATTTGCGGATCAACTGTAGACCCTACTTATTGTAAAAATGTACTTGTCAATCAAAATGGCAACATTTATGATTATGGTCGCATTTCTACTAGAAAATCTTTATCCCAATCTCGGAAGTTCATGAATTCAATGGACTCATATCTTCAAGGTAGCTCTTCTTTGTCTCAATTGACAATTCGTGCCCTTGAAGATTGTCGATTCCTTGCTGACCTAAGTTTTGAATACTTATCAAATACTTATGCCACGACAAATAAATCTAATAACGTTCTTCCAGCTTCTCAAGCTAAAGATTTTGAAACTTTACTCAGTGCCGTTTTGACTAACCAACAAACATGTTTGGATGGTTTGAACAATATAGCTTCTGATCAAAGAGTGAAAAACGACTTGTCGTCATCACTTTCGAATGGCATAAAGCTTCATAGTGTCACTCTAGCCTTGTACAAGAAAGGTTGGATGCCTCAAAATAATATAATAACATCATGGCCACAAAACGGAAGACATTTGAATTTTAAAAATGGTCGTTTACCATTGAAAATGTCAAATAAAACACGTGCTATTTATGATTCTTCTAGACACAATGGAAGAAAACTACTTCAAACGGTCACCAATGAAGATAATGTTGTGGTGAGTGATATTGTTGTTGTTAGTCAAGATGGAAGTGGAAATTTTACCACTATCAATGATGCAATAGCTGCTGCACCGAATAACACAGTTGCTAGTGATGGATACTTTTTCATTTTCATCGGCAAAGGAGTGTATCAAGAGTATGTATCCATACCAAAAAACAAGAAGTACTTGATGATGGTTGGAGAAGGAATAAATCAAACAATTATCACAGGCGACCACAATGTTGTTGATGGGTTCACTACATTCAATTCAGCAACATTTGCTGTGGTTGCTCAAGGGTTCGTGGCAGTTAACATAACATTTCGCAATACCGCTGGACCAGGAAAACACCAAGCAGTTGCAATGAGAAGTGGAGCGGATATGTCCACCTTCTATAGTTGCAGTTTTGAAGGGTATCAAGACACATTGTATACACATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTTATGGAACTGTTGACTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAATTGTAATATTTATCCTCGCCTTCCACTTAGTGGACAATTCAATTCCATCACAGCGCAAGGACGAACTGATCCAAATCAAAATACTGGAATTTCTATACAAAATGCAACTATTAAAGCAGCCGATGATTTGGCTCCCATAGCTGGAACTGTTCAAACATACCTAGGAAGACCATGGAAAGAATATTCAAGGACAATTTTTATGCAATCCTCCATGGATAGTTTCATAAACCCAACTGGTTGGCATGAATGGAATGGTGATTTTGCATTAAGCACTCTGTACTATGCAGAATACAATAATCGAGGAGCAGGATCAAACACTGCAAATCGAGTTACATGGCCTGGTTATCATATTATTGGTGCTACTGATGCGGCCAATTTCATAGTGTCCAATTTTTTGAGCGGTAATGATTGGATTCCTCGAACTGGTGTCCCATTCTTGAGTGGATTGATATAG 1668 0.3723 MAFNNKTILLSILFFLISLCVANGVPPETICGSTVDPTYCKNVLVNQNGNIYDYGRISTRKSLSQSRKFMNSMDSYLQGSSSLSQLTIRALEDCRFLADLSFEYLSNTYATTNKSNNVLPASQAKDFETLLSAVLTNQQTCLDGLNNIASDQRVKNDLSSSLSNGIKLHSVTLALYKKGWMPQNNIITSWPQNGRHLNFKNGRLPLKMSNKTRAIYDSSRHNGRKLLQTVTNEDNVVVSDIVVVSQDGSGNFTTINDAIAAAPNNTVASDGYFFIFIGKGVYQEYVSIPKNKKYLMMVGEGINQTIITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPGKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNSITAQGRTDPNQNTGISIQNATIKAADDLAPIAGTVQTYLGRPWKEYSRTIFMQSSMDSFINPTGWHEWNGDFALSTLYYAEYNNRGAGSNTANRVTWPGYHIIGATDAANFIVSNFLSGNDWIPRTGVPFLSGLI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04534 555 SMART PMEI_2 22 175 IPR006501 GO:0004857
Trre1g04534 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Trre1g04534 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 178 IPR035513 -
Trre1g04534 555 PANTHER PECTINESTERASE 17 544 - -
Trre1g04534 555 Pfam Pectinesterase 242 540 IPR000070 GO:0030599|GO:0042545
Trre1g04534 555 CDD PMEI-like_3 29 180 - -
Trre1g04534 555 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Trre1g04534 555 SUPERFAMILY Pectin lyase-like 238 553 IPR011050 -
Trre1g04534 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Trre1g04534 555 Gene3D - 236 554 IPR012334 -
Trre1g04534 555 FunFam Pectinesterase 28 178 - -
Trre1g04534 555 FunFam Pectinesterase 235 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04534 Trre-Chr1 51305701 51307508 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04534 8 555 Carbohydrate Esterase AT1G02810 59.233 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04534 K01051 - gmx:100813051 852.432