Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04520 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCGTGGCGGTCGCCGTCTCACCGCCGCTGAACTCTGGCCTAACTCTTTTGGTCAACAAATTGACTCCACCTCCTCAGACTTTGATTTTTCTCATACTACTACTGTTGATCAACAACCACCACCCATTACTCTCAAAAGATCACTTCCTCTCAAAGTTAACGAGCGAGTTGAAAAGCCTGTGAAAAAACAAAGGAAGAATCTCTATAGAGGGATTCGACAACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCTAGAAAAGGTGTTCGTGTTTGGCTTGGTACATTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGACAAAGAAGCTAGAAAAATCCGTGGCAAAAAAGCTAAGGTTAATTTTCCTAATGAAGATGATGAATATTCCATTCAAGGTACTCGTCGTCCACCACCACCACCGATTCGACCCACGGGGTCGAATCATACTCTTTATCAACAATATCAGAAAAATCTGAACTTGGAATTTGGTTATGATCTGAACCAAGCTGACACAATTCAAAATTCTCATGAACCTTTTATTATATCTGGTTCTAATGGTGATGAGAATTCTGTATATGGGTCTGGTTCATGTTCAGAAGTTGGTTATTCTGTAATAGAGTTCAACGATGGTTCGAACCCGAATCCGAACGAAACCGGTTATTTTGGTGGTGTTGTGAATGAACATGAAAAAGAGAAAGAGAAAGTACAAGAAACACATGTTGTTGAAGCTGATGAAGCTGCTAAGAATGAAGTTCAAGAGTTATCTGATGAATTAATGGCTTATGAAGATTACATGAAGTTTTATCAGATTCCATATTATGATGGACAATCTATGCCACCAAATATTGTTCAGGAACATGTTGTTGGTGATTTATGGAGCTTTGATTGA 933 0.403 MCGGAIIADFIPRRGGRRLTAAELWPNSFGQQIDSTSSDFDFSHTTTVDQQPPPITLKRSLPLKVNERVEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDEYSIQGTRRPPPPPIRPTGSNHTLYQQYQKNLNLEFGYDLNQADTIQNSHEPFIISGSNGDENSVYGSGSCSEVGYSVIEFNDGSNPNPNETGYFGGVVNEHEKEKEKVQETHVVEADEAAKNEVQELSDELMAYEDYMKFYQIPYYDGQSMPPNIVQEHVVGDLWSFD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04520 310 Gene3D AP2/ERF domain 80 138 IPR036955 GO:0003700|GO:0006355
Trre1g04520 310 CDD AP2 81 138 IPR001471 GO:0003700|GO:0006355
Trre1g04520 310 FunFam Ethylene-responsive transcription factor 2 79 138 - -
Trre1g04520 310 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
Trre1g04520 310 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Trre1g04520 310 PANTHER DNA-BINDING DOMAIN 56 257 IPR044808 GO:0003700|GO:0009873
Trre1g04520 310 Coils Coil 259 279 - -
Trre1g04520 310 MobiDBLite consensus disorder prediction 137 156 - -
Trre1g04520 310 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Trre1g04520 310 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Trre1g04520 310 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Trre1g04520 310 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04520 Trre-Chr1 51100997 51102019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04520 1 138 AP2-EREBP Transcription Factor Family AT3G16770 53.191 2.64e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g04520 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04520 K09286 - gmx:100780763 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04520 1 51100997 51102019 Trre1g04520 1 51100997 51102019 ECH