Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04515 ATGGTGTCACTGAAACTTCAGAAGCGGCTCGCCGCTAGTGTTCTCAAGTGCGGTAGAGGAAAGGTCTGGCTTGACCCTAATGAGTGCAATGAAATCTCCATGGCTAATTCACGCCAAAACATCCGGAAGTTGGTTAAGGATGGTTTCATTATCAGGAAGCCAACTAAGATCCACTCCCGCTCTCGTGCTAGGCGTATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTGGATATGGTAAGAGAAAGGGTACAAGAGAGGCTAGGCTCCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACCGAGAGTCAAAGAAGATCGACAAGCACATGTACCATGATATGTACATGAAGGTCAAGGGTAATGTTTTCAAAAACAAGAGAGTCCTTATGGAGAGCATTCACAAATCCAAGGCTGAGAAGGCAAGAGAGAAGACACTATCTGACCAGTTTGAGGCCAAGAGGGCAAAGAACAAGGCTAGCAGGGAAAGGAAATTTGCTCGCAGAGAAGAGCGCTTTGCTCAAGGTCCGGGAGAGAAGGCACCTGCAGCACCAGTTGCCCCAGCTGCAGCAGCAACCCAGCCTGCCCAAACATCAAAGAAATCCAAGAAGTAA 639 0.4914 MVSLKLQKRLAASVLKCGRGKVWLDPNECNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGEKAPAAPVAPAAAATQPAQTSKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04515 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trre1g04515 212 FunFam Ribosomal protein L19 1 56 - -
Trre1g04515 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Trre1g04515 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre1g04515 212 MobiDBLite consensus disorder prediction 149 212 - -
Trre1g04515 212 MobiDBLite consensus disorder prediction 57 85 - -
Trre1g04515 212 FunFam Ribosomal protein L19 57 192 - -
Trre1g04515 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Trre1g04515 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Trre1g04515 212 Gene3D - 57 188 - -
Trre1g04515 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trre1g04515 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre1g04515 212 MobiDBLite consensus disorder prediction 149 184 - -
Trre1g04515 212 MobiDBLite consensus disorder prediction 57 79 - -
Trre1g04515 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04515 Trre-Chr1 51066539 51067973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04515 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.377 1.02e-129 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04515 K02885 - rvl:131315051 369.007