Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04511 ATGGCGGCATTGTCTTTTTCAGTTGCATCTGTTGTTGAGGATGTTCTTCAACAACATGGTACTCGTCTCAAAGATCTTGATTTGGAATCTAGAAAATCAGAAGAAGCTGCATTCAGAAGATATGAAGCAGCAGGGTGGTTAAGGAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTACCAGCAGAACCATCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGGATCATTCTTTGTAATGTTCTTAACAAGGTTCAACCTGGTGCTGTATCCAAGGTTGTGGAGAGTCCTGTTGATTCTGGACTAATCCCTGATGGAGCGCCATTATCGGCTTTTCAGTATTTTGAAAATGTTAGGAACTTTCTGGTTGCTGTTCAGGAAATTGGAATTCCTACCTTTGAAGCATCTGATCTGGAACAAGGAGGAAAATCGTCAAGGATTGTGAACAGTGTCTTGGCCCTTAAATCCTATAGTGAATGGAAACAAACTGGGGCAAATGGTGTGTGGAAATTTGGTGGAACTATCAAACCTACAATCACTACAAAATCTTTTGTGAGAAAAAACTCGGAACCATTTACCAATTCCTTGTCAAGAACTTCTTCGATCAATGAAAAAAATGAAAAATATATGACTGCCTTTGCCTCTGATGCTGTTGAGTCTAATAAAATGTCTAGTTCTCATTCTTTAGGTATGCTTGTTCGTGCAATACTATTCGATAAGAAACCAGAAGAAGTTCCAACGTTGGTTGAATCTGTTTTGACCAAAGTCGTGGAGGAGTTTGAGCATCGCATTACAAGCCAGGATGAACAGACAAAAACAACTTCAAGAGGTGCGGTGTCCCAAAGCGATGGAGCTGTAGCAAAGTTTACTATGGCACGTAAAAAGGTGGATAACAAGATTTCTACAGTAACAAAGAAAGAAGAATTCATCCATAAAAACCATGTTGCTGATGAGGAATCAAAGAGACAACTTATGAAGCAGCAAATGCTCTTTGATCAACGGCAGAAAGATATACAAGAGTTAAAGCATACAGTTCAAACCACCAAAGCTGGTATGCAGTTCATGCAAATGAAATTTCACGAGGAGTTCTCCAATTTAGGCATGCACATTCATGGTTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTCGAAGAAAATCGCAAACTATACAATGAAGTTCAGGATCTTAAGGGGAGTATTAGGGTGTACTGTCGAGTAAGACCTTTCTTATCTGGACAACCAAATCATTTGAGTACTGTAGAGAACATAGAAGATGGAGTCATCACAATTAATGTTCCATCAAAGAACGGGAAAGGGCGCAGATCCTTCAACTTCAACAAAGTATTTGGACCATCTGCAGCTCAAGGGGAAGTCTTCGCTGATATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTTTAATGTTTGCATATTTGCTTATGGCCAAACTGGATCAGGAAAAACTTTCACCATGACCGGACCAAAAGAGATCACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTTATACAGCAAATCAAAGAAAGGACACTTTTCGCTACGATGTTTCTGTTCAGATGATTGAAATTTATAATGAGCAAGTCAGAGATCTATTGGTTACGGATGGATCAACCAAAAGATATCCTTTTCAAATTCGTAGTAACTCTCAAAGAGGGCTCAGTGTACCAGATGCAAGCCTTGTCCAAGTATCATCAACAAAGGATGTTATTGAACTAATGAACTTAGGCCATAAGAACCGTGCAGTCGGAGCAACGGCCCTTAATGACCGTAGTAGCCGATCTCACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAGCTGTCCTACGCGGATGCATGCATCTCGTTGACTTGGCAGGGAGTGAGAGGGTCGACAAATCTGAGGCGACAGGTGATAGACTGAAAGAGGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATAGCTTCTCTTGCTCAGAAAAACCAACATGTCCCTTATAGAAATAGCAAACTCACGCAATTACTCCAAGATTCGCTTGGACAGGCGAAGACACTAATGTTTGTTCACATTAGTCCAGAGACTAATGCTATTGGAGAAACAATTAGCACTCTAAAATTTGCAGAAAGAGTTGCGACAGTTGAACTTGGCGCTGCTCGAGTAAACAAGGACGGAGCAGATGTCAAAGAGCTCAAAGATCAGATTGCTAGCCTTAAGGCAGCATTGGCACGAAAGGAAGGAAATTCAGAACATTCTTTATCTGGCAGCTCTGGAAAATATAGGACAACGGCTAGTGAACTATCACCCTACCATGCAAGCCAGCGGGCTGCAGATATCGTGGATGGTCCCTTTGGGTTCCGGCAACCAATGATTGATGTTGGCAACTTAGAGCTTCAGAGCAATAATACTACATTGAGGCAAAAAACTCAGAGCTTTGATTTTGATGAGATATTAACAAATTCACCACCGTGGCCGCCAGTGAATGGTCTTGTTCAAAACTGTGTGGAAGATGATGATGATAAAGAAACCGGTACAGGAGAGTGGGTTGATAAGGTCATGGTAAACAAGCTAGATGTAAACAAAACCGGTAACATGTTAGGGTGTTGGGAAACAGATAATGGGAATTTATCCGAGGAATTTTATCAGAAATATCTCCAAGATTCTTCCCAAGTATACTCGGAACGATCTTACAATATGTTCATGAGTGGCAACCAGTTTAACATCGCTGGTTCGGATGACACCGATGATGTTGATGCTGCAACCAGTGATTCCTCGGAACATGACTTGCTTTGGCAATTTAATCATTCCAAAGTTACAAGCATAGCCAATGGAAATGAATCAAAGGATAGGAAATTTGTCTCAAAGTCAGCAAAAAGCCCTGCAGCATTGAGCAAGAATGGTATGCATTCGTCTACTGCTCCTTCACCTTCACGGAAACAAACGAATGGTGTCTCACATCGAACACCAACAAGACAACCAGTTCCTGTTGACATGAAACGGAAAATTGGGACTAGAAAGTGA 3057 0.4118 MAALSFSVASVVEDVLQQHGTRLKDLDLESRKSEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVSKVVESPVDSGLIPDGAPLSAFQYFENVRNFLVAVQEIGIPTFEASDLEQGGKSSRIVNSVLALKSYSEWKQTGANGVWKFGGTIKPTITTKSFVRKNSEPFTNSLSRTSSINEKNEKYMTAFASDAVESNKMSSSHSLGMLVRAILFDKKPEEVPTLVESVLTKVVEEFEHRITSQDEQTKTTSRGAVSQSDGAVAKFTMARKKVDNKISTVTKKEEFIHKNHVADEESKRQLMKQQMLFDQRQKDIQELKHTVQTTKAGMQFMQMKFHEEFSNLGMHIHGLAHAASGYHRVLEENRKLYNEVQDLKGSIRVYCRVRPFLSGQPNHLSTVENIEDGVITINVPSKNGKGRRSFNFNKVFGPSAAQGEVFADMQPLIRSVLDGFNVCIFAYGQTGSGKTFTMTGPKEITEKSQGVNYRALSDLFYTANQRKDTFRYDVSVQMIEIYNEQVRDLLVTDGSTKRYPFQIRSNSQRGLSVPDASLVQVSSTKDVIELMNLGHKNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGAVLRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGQAKTLMFVHISPETNAIGETISTLKFAERVATVELGAARVNKDGADVKELKDQIASLKAALARKEGNSEHSLSGSSGKYRTTASELSPYHASQRAADIVDGPFGFRQPMIDVGNLELQSNNTTLRQKTQSFDFDEILTNSPPWPPVNGLVQNCVEDDDDKETGTGEWVDKVMVNKLDVNKTGNMLGCWETDNGNLSEEFYQKYLQDSSQVYSERSYNMFMSGNQFNIAGSDDTDDVDAATSDSSEHDLLWQFNHSKVTSIANGNESKDRKFVSKSAKSPAALSKNGMHSSTAPSPSRKQTNGVSHRTPTRQPVPVDMKRKIGTRK 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04511 1018 Gene3D Kinesin motor domain 395 767 IPR036961 -
Trre1g04511 1018 PRINTS Kinesin heavy chain signature 597 614 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04511 1018 PRINTS Kinesin heavy chain signature 628 646 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04511 1018 PRINTS Kinesin heavy chain signature 473 494 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04511 1018 PRINTS Kinesin heavy chain signature 677 698 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04511 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 758 IPR027417 -
Trre1g04511 1018 Gene3D - 24 187 IPR036872 -
Trre1g04511 1018 PANTHER KINESIN-LIKE PROTEIN KLP-3 44 966 IPR027640 GO:0003777|GO:0007018
Trre1g04511 1018 MobiDBLite consensus disorder prediction 959 1018 - -
Trre1g04511 1018 Pfam Calponin homology (CH) domain 40 159 IPR001715 GO:0005515
Trre1g04511 1018 CDD KISc_C_terminal 398 728 - -
Trre1g04511 1018 SMART ch_5 39 157 IPR001715 GO:0005515
Trre1g04511 1018 FunFam Kinesin-like protein KIN-14I isoform A 24 176 - -
Trre1g04511 1018 MobiDBLite consensus disorder prediction 971 1001 - -
Trre1g04511 1018 FunFam Kinesin-like protein KIN-14I isoform A 395 768 - -
Trre1g04511 1018 Coils Coil 740 760 - -
Trre1g04511 1018 SUPERFAMILY Calponin-homology domain, CH-domain 40 170 IPR036872 -
Trre1g04511 1018 Pfam Kinesin motor domain 406 725 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04511 1018 ProSiteProfiles Kinesin motor domain profile. 400 726 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04511 1018 SMART kinesin_4 398 734 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre1g04511 1018 CDD CH_AtKIN14-like 39 156 - -
Trre1g04511 1018 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04511 Trre-Chr1 51035490 51041418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04511 388 726 Calmodulin-binding Proteins AT5G65930 42.029 1.20e-75 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04511 K10406 - gmx:100801279 1636.31