Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04498 ATGGCCACCGCAAGGACAGTCAAGGATGTTTCTCCACACGAGTTCGTTAAGGCTTACTCTGCCCATCTCAAAAGATCTGGAAAGATGGAGCTTCCTGAATGGACAGATATCGTGAAGACTGCAAAGTTTAAGGAGTTGGCTCCTTATGATCCTGATTGGTACTATATCAGAGCTGCTTCCATGGCAAGGAAGATTTACATAAGGGGAGGACTTGGTGTTGGTGCTTTCCAGAGGATTTACGGTGGAAGCCAGAGGAATGGTAGTCGCCCACCTCATTTCTGCAAGAGCAGTGGTGCTATTGCACGTCACATTCTTCAACAATTGCAGAACTTGGATATCATTGAGATGGACACCAAGGGTGGCAGGAAAATCACTTCCAGTGGCAGGAGGGATTTGGACCAAGTTGCCGGACGGATTGTGGTTGCTCCTTGA 432 0.4792 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKIYIRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNLDIIEMDTKGGRKITSSGRRDLDQVAGRIVVAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04498 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Trre1g04498 143 Gene3D - 1 142 IPR036388 -
Trre1g04498 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Trre1g04498 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre1g04498 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre1g04498 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trre1g04498 143 FunFam 40S ribosomal protein S19 2 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04498 Trre-Chr1 50893074 50894661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04498 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 84.507 2.51e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04498 K02966 - gmx:100499800 282.722