Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04489 ATGTTGAAGACGGAACCAAATGGATTGGGTCAGATTCTTCGGTCGATGATATTAAGAATGCAATTGATTGAAGACGCAGGTTTTGAAGGTGAGATCTTACATGAACTAGGTTCAGTTGGACCGGTTGGTGATAGTACAGTGGTTGGACAGTTTACGATTGGTGGTATGACGTGTGCGGCATGTGTGAATTCCGTTGAAGGAATCTGA 207 0.4348 MLKTEPNGLGQILRSMILRMQLIEDAGFEGEILHELGSVGPVGDSTVVGQFTIGGMTCAACVNSVEGI 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04489 68 Gene3D - 50 68 - -
Trre1g04489 68 SUPERFAMILY HMA, heavy metal-associated domain 43 67 IPR036163 GO:0046872
Trre1g04489 68 CDD HMA 50 67 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04489 Trre-Chr1 50839520 50839949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04489 21 68 Primary Pumps ATPases AT5G44790 68.750 2.35e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04489 K17686 - gmx:100804960 72.4034