Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04481 ATGGGAAGAGCTCCATGTTGTGAGAAAGTAGGTTTGAAAAGGGGAAGATGGACAACTGAAGAAGATGAGATCTTGACAAAATATATTCAAGCCAATGGAGAAGGTTCTTGGAGGTCGTTGCCCAAAAATGCAGGATTATTAAGATGCGGAAAGAGTTGTAGGCTAAGATGGATTAACTATTTGAGAACCGACCTCAAAAGAGGGAACATTTCTAAGGAAGAGGAAGATACAATTGTAAAGCTACACACTTCATATGGCAACAGATGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACCGACAATGAAATTAAAAATCATTGGAATTCTCACCTAAGCAGAAAAATTTACAGTTTCTCCAAATTATCCAACACTACAGAGCCAAAAATTATTGATATTCCTCCTCCTAACCGCAAATGTGGCAGAACAAGTCGTTGGGCAATGAAGAAAAACAAAAGCTACACAAAACAAACCGTCACTAAAAATACTAAAGAAACTGTCACTAATACTAAACCAACTGTCACTATTGAACCTGAAGTTCAAATTCCACGCACCCCATCACTAGAAAATGAGGTTGATGTGGTAAAAACAACACATGAAGAAGAGAAAGAAGAAACTTATGATTATGAATCATGTGACGACATCATAGTACTGAGTGAATTATTAGATAGCATTAATGAAGAAAGTGGGGCGTTGTGTAAGGAAAATTGTTTGGTGGAAACATGTGGTACTGTTTCAAATTTAAGTGAAGAAAGAGAAATGGTGGGTGTTATGGTTATGGGTGAAGAAAATGAAAGAACAACGAATGATGATGGTGATGTTTATCTTAATCATAAATTGGATTCATGTGAGAACACTGAGAGTAGTGTGAATAATTACCAAAGCTCAAACAATGGGGAAAGTGATGAATGGTCCTCAATAGGTTTAAATTTTGATCATGATGATGATAAATGGAATTGGGAAAGTGTGATGGAGTTTAATATTGTTGATAATGATGATCATAATAGTCATAGAGAGCATAAAGAAAAGATTTTAAATTGGTTGTATGAAGATGATGATTTTGAAGGTGATAGTAACATGTTGGGAGAGATTGATCCTCAGAAACAAAATGATTTAATTGCTTGGTTTCTCTCTTGA 1137 0.3571 MGRAPCCEKVGLKRGRWTTEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISKEEEDTIVKLHTSYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKLSNTTEPKIIDIPPPNRKCGRTSRWAMKKNKSYTKQTVTKNTKETVTNTKPTVTIEPEVQIPRTPSLENEVDVVKTTHEEEKEETYDYESCDDIIVLSELLDSINEESGALCKENCLVETCGTVSNLSEEREMVGVMVMGEENERTTNDDGDVYLNHKLDSCENTESSVNNYQSSNNGESDEWSSIGLNFDHDDDKWNWESVMEFNIVDNDDHNSHREHKEKILNWLYEDDDFEGDSNMLGEIDPQKQNDLIAWFLS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04481 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre1g04481 378 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre1g04481 378 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre1g04481 378 Gene3D - 11 67 - -
Trre1g04481 378 CDD SANT 16 61 IPR001005 -
Trre1g04481 378 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 246 - -
Trre1g04481 378 FunFam Myb transcription factor 11 67 - -
Trre1g04481 378 Gene3D - 71 116 - -
Trre1g04481 378 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre1g04481 378 SMART sant 13 63 IPR001005 -
Trre1g04481 378 SMART sant 66 114 IPR001005 -
Trre1g04481 378 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre1g04481 378 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre1g04481 378 CDD SANT 71 112 IPR001005 -
Trre1g04481 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04481 Trre-Chr1 50772677 50778288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04481 1 152 MYB Transcription Factor Family AT5G49330 66.864 9.83e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g04481 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04481 K09422 - gmx:100814275 326.635