Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04474 ATGCTTGAAACCACTCACTCATCGCGAATCTTTCGCGGTGTTCATTTCGCTCTCTTTGGTTTCGATCCTCACACAGAATCTCAGATACGATTCAAGCTTGTTAATGGCGGTGGAATTGATGTGGGGAAAAACAGTGGTAGTTGCACGCATGTCATTGTTGATAAGATTGCTTATGATAATCCTGTGTGTATTGCTGCTAGAAATGATGGAAAAACGTTGGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCTGTTGATGCCAACTCGGTTATGTACAGACCGCTGAAAGATTTGGATGGCATTCCAGGTGCAAAAGATTTGATTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGAAGACATTATGACAATGGTTGGCCTGATGGGTGCAAAATTTTCTAAACCGTTGGTGGCAAACGAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAGTACGAGCTTGCCAAGAAAATGGCCAAAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGAATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTGGAGATGATGGTGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCTAAGCTGGGGCAATCAGGGGGAAGGAATAGAAGCAGAAGTCCCCTTGGTTCAAAATTTGGTACAGCTGTAACTCATGGATTGTCAAAATCTTTAAGAGAGGAGGCATCAAATGCCATCCCAGATTCTACTGGTCCTCAGGTTTTGCCAAACGCCGGTAAGGGTAAAGACTCTTCAACTACTACAGGAAATAAGACCAATTCTGATCAAGACGTAGACTTGCATAATATTGGCAACCTGAAGGTAAGCTGTCAGGTTCCTGATGTTTCTTGGCATTCTACATCATGTCAGCTACCTGAATCATATATTAAGACCGTTGAGTCTAAGAATGCTGATTTTCCAAAGTCATCTGGTTTCCAGGATCTTGGCATTACCGGAAATACAAATGCATCTGGTCAGCGACCTAATCTGCGTGATGACACTTCGGAGACGAAGAAGTTAAGTTACACAAGATCAACTTCTGCAAGTGCTGATGTACTTGCACATTCAGATGAAAAGTTCGGTGCTACAAGTTATTCTAGGAAGAACCAAAAAGGGTTTAACTTTTCAAGGGAAATTGACGAATGTGACGGCAACAACCTTGAAACCCCTTCCACCAAGGTAGAAAAGGCAAGTGAGGGAATCAAATCTGCCTGTGTTGAAGGTTCTGGGAAAGAAACTGGTGTTATTCAAGAGGATTGTGGAAATAATTTATTGCCTCAAAAGAGGACGAATGGAGCCGCTTCAACCAAATCAAAATCAAGAAAGATCACTGCTAATGCAAAGTTGTCTACTGAAAGAACACCACCAGCAAATGGTAAATCTCAAGGATTAAAAGTGTCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTGCTGACAAAGATGGTAAAAATAACTCAGATACTTGCTTGATTTCTAAATCTACAGCTTCTGCCACCAACTCAGTGGCATTTGATAAGCCTTTCTCAAGAAATGCAGAGTCTGCTCAATGTAATAATGCTTGTCAGAATTCAGCAAAAAAGGCTGTTCAAAGCTTAAGAATGTCTAAAATTAGTGATGAGACTGATACTGATATAACAGGTTTTGGAATGGGACAAAGTGATAATGAAGCAGAGAAAGTTAATGTCACTACAAATCTTGAGTGTCCATCACCAGGAAAGAAGTCAAAAAATGAAGTATTTGCTGGTCTTGATAATTGGGATTTAATCAATGAAGAAAGCAATAAGCTGATTAAAAAGTCACCCCGCAAGAAATCAGCTGTCATGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTGAATTGAAAAGTCCAGTTTGCTTGAATAAAACTATGCAGCAAGATGAAGGCGTAAGTTCCTCCAGTAGAAGCAAAGAAATATCAACTTCTTGTGCTAAGAAGCATCAGGCATCTCCCGAAATCCTTGATGTTAATAAATTGATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGATGGTGGCAAAACTGATTTTTTGGATGATGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGACAAAGAATTGGTTCATCTTTCAAAGAAATTAGACACCTCAGCAGAAGAGAAGTTAGATGCAATTGACCGTGATAAAAAATGTGAAACAATGCCTCCTAAAAAGCTCAGTAATAAAACTGAAAAACAGAAGCCACCTTCCCTGTTAGACTCAACCTCAAAGTTAAAAGTTAAGCATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGCTGGAAAGAAATTAGCGAAATCTGAAGAGGCAGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGAAATAAAAATCCTGAAAGAAATGTCTGTACATTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGCCAGATAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAGATGATAGAGAACATGGTTTAGTGGAGAGAACAAGTGTTGGAAATCAAACTACTAAATCTAGTGTTAAGCCAGCAAATATCAAGTCTAAGAAAATGAAGCACAATTCATCTATATCCGAATTTAAAGCAGCAGCAAAAACTGAAGCAACATGTTTTATATTAAGTGGGCATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGCGTTTGAAAGGGAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAGTTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCTAGTAGCCAGGCAGGAAAATTATTGCCCGAGGAACCTTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGCATTGTTGTATATGGCGATTGTTTTGCTCCACCTTTGGATACTCTAAAGCGTGTGGTCAAAGCTGGAGATGGAACAATATTAGCAACGTCCCCTCCATATACCCGCTTCCTTGATAGTGGAGTTGACTATGCCGTAGTTAGCCCTGGCATGCCGCGCGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCATGTGTTGTAGCGGACTACTTGGTGGAGTATGTATGCAAGCCTGGGTTCTCCCTTGAGAGACATGTGTTGTATGGCACTCATGCTTGGGCAGATAGGTCATTTGCAAAACTTCAGAGTAAGGCAGAAGAGATTATTGAGGTCATTCCTCCTAAGGATTGCAATGATGATGATGATGATGTAGCTTGCCAAGTATGTGGATCCCGGGAAAGAGGAGATGTCATGCTGATTTGTGGTGATGAAAGTGGATCTGTTGGCTGTGGAGTGGGTACACATATCGATTGCTGCGATCCTCCGCTCACAGTTGTTCCTGAGGAAGATTGGTTTTGCCCAAAATGCAATAGCACCCAAAAATGCTCACAAAATCCCAATAAAAGGAAAAAGGGTGCATTGTCTTCATCAAAGAAGAAGTGA 3717 0.414 MLETTHSSRIFRGVHFALFGFDPHTESQIRFKLVNGGGIDVGKNSGSCTHVIVDKIAYDNPVCIAARNDGKTLVTALWVEHSADIGMPVDANSVMYRPLKDLDGIPGAKDLIVCLTGYLRQDREDIMTMVGLMGAKFSKPLVANEVTHLICYKFEGEKYELAKKMAKIKLVNHRWLEDCLKNWVLLPEDKYNKSGFELEMMVEEAKDSEDEAEDSKLGQSGGRNRSRSPLGSKFGTAVTHGLSKSLREEASNAIPDSTGPQVLPNAGKGKDSSTTTGNKTNSDQDVDLHNIGNLKVSCQVPDVSWHSTSCQLPESYIKTVESKNADFPKSSGFQDLGITGNTNASGQRPNLRDDTSETKKLSYTRSTSASADVLAHSDEKFGATSYSRKNQKGFNFSREIDECDGNNLETPSTKVEKASEGIKSACVEGSGKETGVIQEDCGNNLLPQKRTNGAASTKSKSRKITANAKLSTERTPPANGKSQGLKVSSVVDEPPVSDGFLSADKDGKNNSDTCLISKSTASATNSVAFDKPFSRNAESAQCNNACQNSAKKAVQSLRMSKISDETDTDITGFGMGQSDNEAEKVNVTTNLECPSPGKKSKNEVFAGLDNWDLINEESNKLIKKSPRKKSAVMRTLGSRPRKGVTAELKSPVCLNKTMQQDEGVSSSSRSKEISTSCAKKHQASPEILDVNKLMEQEKVCEYAEDGGKTDFLDDETEAPDDKCEYELGVAPDKELVHLSKKLDTSAEEKLDAIDRDKKCETMPPKKLSNKTEKQKPPSLLDSTSKLKVKHQATKRPASKTKKTTAGKKLAKSEEAAVSGEKIPNETKDEAEIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPDDREHGLVERTSVGNQTTKSSVKPANIKSKKMKHNSSISEFKAAAKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRVVKAGDGTILATSPPYTRFLDSGVDYAVVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWADRSFAKLQSKAEEIIEVIPPKDCNDDDDDVACQVCGSRERGDVMLICGDESGSVGCGVGTHIDCCDPPLTVVPEEDWFCPKCNSTQKCSQNPNKRKKGALSSSKKK 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04474 1238 Gene3D BRCT domain 1028 1127 IPR036420 -
Trre1g04474 1238 Gene3D BRCT domain 99 221 IPR036420 -
Trre1g04474 1238 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Trre1g04474 1238 Gene3D BRCT domain 910 1027 IPR036420 -
Trre1g04474 1238 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Trre1g04474 1238 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 842 900 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 331 364 - -
Trre1g04474 1238 Pfam twin BRCT domain 111 175 IPR001357 -
Trre1g04474 1238 CDD BRCT_TopBP1_rpt7 918 991 - -
Trre1g04474 1238 ProSiteProfiles Zinc finger PHD-type profile. 1161 1217 IPR019787 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 331 351 - -
Trre1g04474 1238 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 204 235 - -
Trre1g04474 1238 Pfam BRCA1 C Terminus (BRCT) domain 921 986 IPR001357 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 441 513 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 444 486 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 622 681 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 267 286 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 1217 1238 - -
Trre1g04474 1238 Pfam PHD-finger 1164 1216 IPR019787 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 806 830 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 789 805 - -
Trre1g04474 1238 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 746 1230 IPR044254 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 753 772 - -
Trre1g04474 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1128 1230 IPR013083 -
Trre1g04474 1238 Gene3D BRCT domain 1 95 IPR036420 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 652 681 - -
Trre1g04474 1238 ProSiteProfiles BRCT domain profile. 916 1001 IPR001357 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 248 286 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 753 830 - -
Trre1g04474 1238 SMART PHD_3 1163 1215 IPR001965 -
Trre1g04474 1238 SUPERFAMILY FYVE/PHD zinc finger 1138 1215 IPR011011 -
Trre1g04474 1238 SUPERFAMILY BRCT domain 918 1005 IPR036420 -
Trre1g04474 1238 CDD BRCT_PAXIP1_rpt4 111 185 - -
Trre1g04474 1238 SMART BRCT_7 908 991 IPR001357 -
Trre1g04474 1238 SMART BRCT_7 1029 1116 IPR001357 -
Trre1g04474 1238 SMART BRCT_7 106 183 IPR001357 -
Trre1g04474 1238 SMART BRCT_7 8 86 IPR001357 -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 402 421 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 877 892 - -
Trre1g04474 1238 MobiDBLite consensus disorder prediction 855 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04474 Trre-Chr1 50659691 50667112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04474 129 244 Core DNA Replication Machinery Family AT4G02110 62.931 7.56e-38 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre1g04474 BRCT 4.4e-08 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04474 K10728 - gmx:100783461 1519.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04474 1 50659691 50667112 Trre1g04474 1 50659691 50667112 ECH