LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g04473	ATGATTGAAGAAGCAAAAAATGTGGAGCTGCAAGAGAAGCTGAGTAATGAAGTAGCAAAAAATGCTGTCTATTATGGAAAGGAAGGATTACAGAAAATGTTGTTTGACATACTTGAAAAAAATACTATGAAGGAGATTGAGGAGTGTCAATCGAAGAAGAACAACATGAAGGCGTTTGTATCCATCTACACGCCACTCGCAGACCTTATTTCCTCCTACTTTCTCGGTGGAGGTTTTATCTGGGTAAACAACCATGTGTATCCAGGAGAGGTTGTATTTGGGGTTTGCAAGAAGTTTGATGGTCTTGCTGAGATCTTCCCAACCAGGGGTCTTTCTATTGAGATGGTGTTGATTGATGATAAGGAAGAATTCCTGTCAAAGGCGACACCGGATAAGGGGCTGATTAGGCTGTTGGTGTGCATGGGAGAAGCATTAAGAACATCATTCAAAGTGAAGACAGCTTCTTGTGGTGGAACACAATGTGTTAATTCTTTTGGGGATGAACAGCTTGCCGTGGATATGTTGGCTAACAACCTTCTTTTTGAGGCCTTAAAACACTCTCACTTCTGCAAGTATGCATGTTCAGAAGAAATCCCCGAGCTTCAAGACATGGGAGGTCCAGTTGAAGGTGGATTTAGTGTTGCATTTGACCCTCTTGATGGTTCCAGCATAGTAGACACAAATTTCACAGTAGGCACAATCTTTGGTGTGTGGCCTGGTGAGAAGTTGATTGGAGTCACCGGAAGAGATCAAGTTGCGGCGGCTGTGGGAGTTTTGGGTCCTAGAACTACTTATGTGCTTGCTCTTAAAGATTTCCCTGGTACTCATGAATTTCTCCTTCTTGATGAAGCTCAGGGTCCAAAGGAATTTCAAACTGAGATAGCAACAGATGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCTTCAATACCCATTATCCACAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGTAGCTTCAAAATTAGTACCAGTTGACCAATCTGAAATAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAAAGTATATGCTAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTGTTGTCGAGCTGCTAATAGGGGAGAGACCTTTTAGTTTTAGTAGGCCAGAAGAGAGAAGAAATCTTGCTGCGCATTTTCTGTCTTGCGATAATGTGTTTGAAATTATCCAAGATGGTATGTTGAATGAAGAAAACAAAAAAGAGATCAAGGAGGTAGTTGTACTTGCAGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAAACAATGATCTTAAATGTAGAGGGGAATTAG	1410	0.4149	MIEEAKNVELQEKLSNEVAKNAVYYGKEGLQKMLFDILEKNTMKEIEECQSKKNNMKAFVSIYTPLADLISSYFLGGGFIWVNNHVYPGEVVFGVCKKFDGLAEIFPTRGLSIEMVLIDDKEEFLSKATPDKGLIRLLVCMGEALRTSFKVKTASCGGTQCVNSFGDEQLAVDMLANNLLFEALKHSHFCKYACSEEIPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGEKLIGVTGRDQVAAAVGVLGPRTTYVLALKDFPGTHEFLLLDEAQGPKEFQTEIATDVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFVASKLVPVDQSEIATMVQGTIGYLDPKYMLTSQLTEKSDVYSFGVVVVELLIGERPFSFSRPEERRNLAAHFLSCDNVFEIIQDGMLNEENKKEIKEVVVLAAKCLRLRGEERPSMKEVAMELETMILNVEGN	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g04473	469	SUPERFAMILY	Carbohydrate phosphatase	142	304	-	-
	Trre1g04473	469	Pfam	Fructose-1-6-bisphosphatase, N-terminal domain	120	286	IPR033391	-
	Trre1g04473	469	SUPERFAMILY	Protein kinase-like (PK-like)	291	464	IPR011009	-
	Trre1g04473	469	PRINTS	Sedoheptulose-1,7-bisphosphatase family signature	185	205	IPR023079	GO:0005975\|GO:0016791
	Trre1g04473	469	PRINTS	Sedoheptulose-1,7-bisphosphatase family signature	169	184	IPR023079	GO:0005975\|GO:0016791
	Trre1g04473	469	PRINTS	Sedoheptulose-1,7-bisphosphatase family signature	245	263	IPR023079	GO:0005975\|GO:0016791
	Trre1g04473	469	FunFam	Sedoheptulose-1,7-bisphosphatase, chloroplastic	117	289	-	-
	Trre1g04473	469	Gene3D	-	118	284	-	-
	Trre1g04473	469	ProSiteProfiles	Protein kinase domain profile.	135	463	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g04473	469	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	292	462	IPR045274	GO:0007166
	Trre1g04473	469	SMART	serkin_6	229	463	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g04473	469	FunFam	Wall-associated receptor kinase 2	277	468	-	-
	Trre1g04473	469	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	313	325	IPR008271	GO:0004672\|GO:0006468
	Trre1g04473	469	Pfam	Protein kinase domain	291	455	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g04473	469	Gene3D	Transferase(Phosphotransferase) domain 1	285	467	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g04473	Trre-Chr1	50644248	50649018	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g04473	289	462	Receptor kinase-like Gene Family	AT1G21240	58.192	1.58e-63	211

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Trre1g04473		Pkinase	2e-27	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g04473	K01100		-	pop:112328513	310.842