Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g04465 ATGGGAGAAGTTGTTTTGTTGGTTGATGATTTGAAAACAATTTCTGGATTTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTTCAAAAGGTTAGAAGCTCCTTGTGCTTGTTCTGGTACTGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGTAATGAGAAAGGAAACACAACTTGTGAAATTTGTTTACAGCAATATGAACCTGGATATATAGCACCGCCACCAAAGAAACCTCAAAAATCTAATGAAGCAATGACCATTGGAATTAGAGATAGCCTTGAAATATCATCAAGGAGGGAGGAAGAAGGATTAAACAGAAGAATAGTTGGTAATGTAATATTAACAAGACAACAAAACAATTACTCACAATGCAACTATGCTGCTGATAGAAGCGCCTCTTGTTGTCGATCACTGGCTTTAGCCTTTACTTTCATATTACTTCTAAGACATCTTTTTGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAGTTCTTACTATCTTTATGCTAAGGGCCAGTGGAATTATTATACCTATGTGCATAATTATTAGGACTATGGGTGCCATTCATAAAAGTATTCAGCGTCATTATCAACAGGATTCTGAGGATGAGTCATCAATGTCTGATGGAGATGATGAAGAAAATGAGACATCACATATTGCAATTCTAAGACATTCACATTATTAG 708 0.3517 MGEVVLLVDDLKTISGFSRCRICHEEEFESFKRLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYIAPPPKKPQKSNEAMTIGIRDSLEISSRREEEGLNRRIVGNVILTRQQNNYSQCNYAADRSASCCRSLALAFTFILLLRHLFALLTNGMEDYPFTVLTIFMLRASGIIIPMCIIIRTMGAIHKSIQRHYQQDSEDESSMSDGDDEENETSHIAILRHSHY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g04465 235 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 203 IPR033275 -
Trre1g04465 235 Pfam Protein of unknown function (DUF3675) 73 193 IPR022143 -
Trre1g04465 235 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Trre1g04465 235 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Trre1g04465 235 CDD RING_CH-C4HC3_MARCH 20 67 - -
Trre1g04465 235 SMART ringv_2 19 68 IPR011016 GO:0008270
Trre1g04465 235 SUPERFAMILY RING/U-box 18 72 - -
Trre1g04465 235 MobiDBLite consensus disorder prediction 205 224 - -
Trre1g04465 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 75 IPR013083 -
Trre1g04465 235 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g04465 Trre-Chr1 50517686 50523105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g04465 9 67 C3H Transcription Factor Family AT2G37950 41.667 3.92e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g04465 - - gmx:100797029 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g04465 1 50517686 50523105 Trre1g04465 1 50517686 50523105 ECH
Trre13g04812 13 54775360 54778846 Trre1g04465 1 50517686 50523105 PCT